Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20057

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20056 and SM_b20057 overlap by 4 nucleotidesSM_b20057 and SM_b20058 overlap by 4 nucleotidesSM_b20058 and SM_b20059 are separated by 3 nucleotides SM_b20056: SM_b20056 - ABC transporter substrate-binding protein, at 66,644 to 67,711 _b20056 SM_b20057: SM_b20057 - ABC transporter permease, at 67,708 to 68,751 _b20057 SM_b20058: SM_b20058 - ABC transporter ATP-binding protein, at 68,748 to 69,548 _b20058 SM_b20059: SM_b20059 - SAM-dependent methyltransferase, at 69,552 to 70,331 _b20059 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1at 68.723 kb on + strandat 69.594 kb on + strandat 69.595 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
68,723 + -0.5
69,594 + -1.1
69,595 - +0.7

Or see this region's nucleotide sequence