Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20049 and SM_b20050 are separated by 143 nucleotides SM_b20050 and SM_b20054 are separated by 95 nucleotides
SM_b20049: SM_b20049 - elongation factor G, at 60,310 to 62,271
_b20049
SM_b20050: SM_b20050 - hypothetical protein, at 62,415 to 62,924
_b20050
SM_b20054: SM_b20054 - non-heme chloroperoxidase, at 63,020 to 63,847
_b20054
Position (kb) 62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 61.780 kb on + strand, within SM_b20049 at 61.780 kb on + strand, within SM_b20049 at 61.781 kb on - strand, within SM_b20049 at 61.903 kb on + strand, within SM_b20049 at 62.213 kb on - strand at 62.283 kb on + strand at 62.284 kb on - strand at 62.376 kb on + strand at 62.605 kb on + strand, within SM_b20050 at 62.606 kb on - strand, within SM_b20050 at 62.719 kb on - strand, within SM_b20050 at 62.977 kb on - strand at 62.999 kb on - strand at 62.999 kb on - strand at 62.999 kb on - strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.067 kb on - strand at 63.067 kb on - strand at 63.099 kb on + strand at 63.110 kb on + strand, within SM_b20054 at 63.351 kb on + strand, within SM_b20054 at 63.352 kb on - strand, within SM_b20054 at 63.397 kb on - strand, within SM_b20054 at 63.699 kb on + strand, within SM_b20054 at 63.737 kb on + strand, within SM_b20054 at 63.737 kb on + strand, within SM_b20054 at 63.807 kb on + strand at 63.807 kb on + strand at 63.807 kb on + strand at 63.895 kb on + strand at 63.895 kb on + strand at 63.895 kb on + strand at 63.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 61,780 + SM_b20049 0.75 -0.2 61,780 + SM_b20049 0.75 -1.4 61,781 - SM_b20049 0.75 -0.6 61,903 + SM_b20049 0.81 -0.0 62,213 - +1.1 62,283 + +2.4 62,284 - -3.2 62,376 + +0.2 62,605 + SM_b20050 0.37 -0.5 62,606 - SM_b20050 0.37 +0.4 62,719 - SM_b20050 0.60 +1.5 62,977 - -0.6 62,999 - -1.7 62,999 - +0.1 62,999 - -2.7 63,066 + -2.3 63,066 + -0.6 63,066 + -0.1 63,066 + +0.6 63,067 - +0.9 63,067 - -1.4 63,099 + -0.4 63,110 + SM_b20054 0.11 -0.2 63,351 + SM_b20054 0.40 -0.2 63,352 - SM_b20054 0.40 +4.8 63,397 - SM_b20054 0.46 -0.4 63,699 + SM_b20054 0.82 -2.0 63,737 + SM_b20054 0.87 -0.2 63,737 + SM_b20054 0.87 -1.1 63,807 + -0.5 63,807 + +0.3 63,807 + +0.4 63,895 + +0.9 63,895 + -0.2 63,895 + +1.1 63,896 - +2.1
Or see this region's nucleotide sequence