Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20026

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20025 and SM_b20026 are separated by 206 nucleotidesSM_b20026 and SM_b20027 are separated by 12 nucleotides SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124 _b20025 SM_b20026: SM_b20026 - hypothetical protein, at 37,331 to 37,792 _b20026 SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310 _b20027 Position (kb) 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 36.405 kb on + strand, within SM_b20025at 36.406 kb on - strand, within SM_b20025at 36.492 kb on + strand, within SM_b20025at 36.493 kb on - strand, within SM_b20025at 36.693 kb on + strand, within SM_b20025at 36.694 kb on - strand, within SM_b20025at 36.694 kb on - strand, within SM_b20025at 36.804 kb on + strand, within SM_b20025at 36.906 kb on + strand, within SM_b20025at 36.907 kb on - strand, within SM_b20025at 36.907 kb on - strand, within SM_b20025at 37.113 kb on + strandat 37.742 kb on + strand, within SM_b20026at 37.742 kb on + strand, within SM_b20026at 37.791 kb on - strandat 37.791 kb on - strandat 37.791 kb on - strandat 37.884 kb on + strandat 37.885 kb on - strandat 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.007 kb on - strand, within SM_b20027at 38.007 kb on - strand, within SM_b20027at 38.010 kb on - strand, within SM_b20027at 38.010 kb on - strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.054 kb on - strand, within SM_b20027at 38.244 kb on - strand, within SM_b20027at 38.360 kb on - strand, within SM_b20027at 38.360 kb on - strand, within SM_b20027at 38.363 kb on + strand, within SM_b20027at 38.363 kb on + strand, within SM_b20027at 38.364 kb on - strand, within SM_b20027at 38.403 kb on - strand, within SM_b20027at 38.598 kb on + strand, within SM_b20027at 38.599 kb on - strand, within SM_b20027at 38.640 kb on - strand, within SM_b20027

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
36,405 + SM_b20025 0.26 +1.0
36,406 - SM_b20025 0.26 +1.0
36,492 + SM_b20025 0.35 -0.2
36,493 - SM_b20025 0.35 -0.7
36,693 + SM_b20025 0.56 +0.4
36,694 - SM_b20025 0.56 -0.8
36,694 - SM_b20025 0.56 +0.2
36,804 + SM_b20025 0.67 -1.2
36,906 + SM_b20025 0.78 +2.1
36,907 - SM_b20025 0.78 +0.7
36,907 - SM_b20025 0.78 +0.6
37,113 + +0.1
37,742 + SM_b20026 0.89 -2.0
37,742 + SM_b20026 0.89 -3.6
37,791 - +1.6
37,791 - -1.2
37,791 - -1.2
37,884 + -0.5
37,885 - -0.7
38,006 + SM_b20027 0.13 +0.5
38,006 + SM_b20027 0.13 +0.5
38,006 + SM_b20027 0.13 -0.0
38,006 + SM_b20027 0.13 +1.6
38,007 - SM_b20027 0.13 -1.6
38,007 - SM_b20027 0.13 +1.5
38,010 - SM_b20027 0.14 -0.8
38,010 - SM_b20027 0.14 -2.8
38,053 + SM_b20027 0.16 +1.6
38,053 + SM_b20027 0.16 -0.2
38,053 + SM_b20027 0.16 -1.1
38,054 - SM_b20027 0.17 -0.8
38,244 - SM_b20027 0.29 +1.1
38,360 - SM_b20027 0.37 -1.8
38,360 - SM_b20027 0.37 -0.1
38,363 + SM_b20027 0.37 +0.3
38,363 + SM_b20027 0.37 +0.3
38,364 - SM_b20027 0.37 -0.1
38,403 - SM_b20027 0.40 -3.5
38,598 + SM_b20027 0.53 +0.6
38,599 - SM_b20027 0.53 -2.1
38,640 - SM_b20027 0.55 +0.7

Or see this region's nucleotide sequence