Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35215

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,504,508	-		BPHYT_RS35205	0.69	-0.5
3,504,683	-				+0.1
3,504,683	-				+0.2
3,504,792	-				+0.4
3,504,834	+				-0.0
3,504,834	+				-0.9
3,504,910	+				-1.7
3,504,910	+				-0.3
3,504,910	+				-0.2
3,504,910	+				+0.5
3,504,955	+				-1.3
3,504,955	+				+0.4
3,504,956	-				+0.6
3,504,956	-				+0.4
3,505,012	-				+0.0
3,505,012	-				-0.1
3,505,012	-				+0.8
3,505,012	-				+0.1
3,505,014	-				+1.2
3,505,014	-				+0.0
3,505,014	-				-0.0
3,505,381	-				+0.8
3,505,451	+				-0.2
3,505,451	+				-0.1
3,505,452	-				+0.0
3,505,452	-				-0.1
3,505,743	+		BPHYT_RS35215	0.57	-1.4
3,506,113	-				+0.9
3,506,123	-				-0.9
3,506,246	-		BPHYT_RS35220	0.34	-0.5
3,506,434	+		BPHYT_RS35220	0.80	-0.5
3,506,434	+		BPHYT_RS35220	0.80	-0.5
3,506,434	+		BPHYT_RS35220	0.80	+1.0
3,506,435	-		BPHYT_RS35220	0.80	+0.5
3,506,435	-		BPHYT_RS35220	0.80	-0.6
3,506,482	+				-0.1
3,506,483	-				-1.1
3,506,861	-		BPHYT_RS35225	0.27	+0.5