Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33900

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,198,326	-				-2.5
3,198,326	-				+0.9
3,198,409	+				-2.9
3,198,410	-				-0.4
3,198,410	-				+1.3
3,198,411	+				-4.2
3,198,411	+				-3.8
3,198,412	-				-0.4
3,198,412	-				+0.2
3,198,474	+				+0.0
3,198,514	+				-0.1
3,198,514	+				-1.5
3,198,606	-				-5.4
3,198,675	-		BPHYT_RS33900	0.14	-3.4
3,198,767	+		BPHYT_RS33900	0.23	-4.7
3,198,768	-		BPHYT_RS33900	0.23	-5.9
3,198,932	+		BPHYT_RS33900	0.38	-2.1
3,198,932	+		BPHYT_RS33900	0.38	-2.2
3,198,932	+		BPHYT_RS33900	0.38	-4.0
3,198,932	+		BPHYT_RS33900	0.38	-3.2
3,198,932	+		BPHYT_RS33900	0.38	-3.6
3,198,933	-				-0.0
3,198,933	-		BPHYT_RS33900	0.38	-3.8
3,198,933	-		BPHYT_RS33900	0.38	-5.6
3,198,933	-		BPHYT_RS33900	0.38	-2.6
3,198,933	-		BPHYT_RS33900	0.38	-3.3
3,198,933	-		BPHYT_RS33900	0.38	-4.2
3,198,933	-		BPHYT_RS33900	0.38	-2.6
3,198,933	-		BPHYT_RS33900	0.38	-4.5
3,198,933	-		BPHYT_RS33900	0.38	-2.2
3,198,933	-		BPHYT_RS33900	0.38	-4.6
3,199,187	+		BPHYT_RS33900	0.62	+0.7
3,199,188	-		BPHYT_RS33900	0.62	-2.8
3,199,188	-		BPHYT_RS33900	0.62	-2.7
3,199,865	+		BPHYT_RS33905	0.19	+0.5
3,200,256	-		BPHYT_RS33905	0.78	-3.2
3,200,380	+				-1.4