Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33555

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,112,276	-				+0.2
3,112,331	-				+0.3
3,112,350	-				-2.2
3,112,354	-				+1.8
3,112,534	-		BPHYT_RS33550	0.41	+0.4
3,112,534	-		BPHYT_RS33550	0.41	-1.6
3,112,769	-				-0.3
3,113,063	-		BPHYT_RS33555	0.14	-0.7
3,113,105	-		BPHYT_RS33555	0.34	+0.1
3,113,105	-		BPHYT_RS33555	0.34	-0.1
3,113,105	-		BPHYT_RS33555	0.34	-1.4
3,113,123	-		BPHYT_RS33555	0.42	-1.3
3,113,281	-				+1.0
3,113,281	-				+5.4
3,113,432	+				+1.9
3,113,432	+				-0.6
3,113,432	+				+4.6
3,113,432	+				-0.5
3,113,783	+		BPHYT_RS33560	0.39	-1.5
3,113,783	+		BPHYT_RS33560	0.39	-0.5
3,113,783	+		BPHYT_RS33560	0.39	+0.9
3,113,784	-		BPHYT_RS33560	0.39	+0.5
3,114,008	+		BPHYT_RS33560	0.57	-0.8
3,114,096	+				-2.3