Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32600

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,884,090	+				-0.5
2,884,268	-		BPHYT_RS32595	0.32	+0.2
2,884,268	-		BPHYT_RS32595	0.32	+0.9
2,884,526	+				-0.4
2,884,595	+				-0.2
2,884,596	-				-0.6
2,884,649	+				-0.3
2,884,650	-				-1.2
2,884,923	+				-0.1
2,884,932	+				-0.5
2,884,932	+				+2.5
2,884,932	+				-0.8
2,884,933	-				-0.2
2,884,933	-				-0.6
2,884,954	+				-0.2
2,884,984	-				-0.7
2,885,032	-		BPHYT_RS32600	0.11	-1.5
2,885,032	-		BPHYT_RS32600	0.11	-0.6
2,885,234	+				+0.5
2,885,331	+		BPHYT_RS32600	0.74	-0.9
2,885,331	+		BPHYT_RS32600	0.74	+0.5
2,885,332	-		BPHYT_RS32600	0.74	+0.1
2,885,332	-		BPHYT_RS32600	0.74	-0.3
2,885,380	+		BPHYT_RS32600	0.84	-1.4
2,885,380	+		BPHYT_RS32600	0.84	-0.1
2,885,383	+		BPHYT_RS32600	0.85	-1.9
2,885,384	-		BPHYT_RS32600	0.85	+0.1
2,885,421	-				+1.1
2,885,626	-				-0.3
2,885,854	-		BPHYT_RS32605	0.15	+0.8
2,885,898	+		BPHYT_RS32605	0.27	+0.5
2,885,899	-		BPHYT_RS32605	0.28	-1.3
2,885,899	-		BPHYT_RS32605	0.28	-0.6
2,886,028	-		BPHYT_RS32605	0.64	+4.7
2,886,447	+		BPHYT_RS32610	0.19	-0.2
2,886,451	-		BPHYT_RS32610	0.20	+0.1