Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26705

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,558,671	+		BPHYT_RS26695	0.84	-1.2
1,558,672	-		BPHYT_RS26695	0.84	-1.7
1,558,806	-				-0.8
1,558,811	-				-0.1
1,558,998	+				+0.5
1,558,998	+				+0.4
1,559,027	+		BPHYT_RS26700	0.12	+0.5
1,559,056	+		BPHYT_RS26700	0.17	-0.6
1,559,064	+		BPHYT_RS26700	0.18	-0.4
1,559,145	+		BPHYT_RS26700	0.31	+0.0
1,559,159	-		BPHYT_RS26700	0.34	+1.2
1,559,183	-		BPHYT_RS26700	0.38	+0.1
1,559,199	-		BPHYT_RS26700	0.40	-0.4
1,559,492	-		BPHYT_RS26700	0.88	-1.1
1,559,680	+		BPHYT_RS26705	0.25	-0.5
1,559,681	-		BPHYT_RS26705	0.25	+0.8
1,559,881	-		BPHYT_RS26705	0.66	-1.3
1,559,883	+		BPHYT_RS26705	0.67	+0.3
1,559,884	-		BPHYT_RS26705	0.67	-0.4
1,560,034	+				+0.7
1,560,035	-				-0.7
1,560,044	-				-1.0
1,560,089	+				+0.3
1,560,089	+				+0.2
1,560,089	+				-0.3
1,560,090	-				-0.7
1,560,090	-				+0.8
1,560,090	-				-0.2
1,560,144	-		BPHYT_RS26710	0.17	+0.2
1,560,236	+		BPHYT_RS26710	0.36	+0.6
1,560,237	-		BPHYT_RS26710	0.36	+0.5
1,560,237	-		BPHYT_RS26710	0.36	+0.1
1,560,326	+		BPHYT_RS26710	0.55	-0.7
1,560,542	-				-1.1
1,560,622	+				+2.9