Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19575

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,403,196	-				-0.1
4,403,318	+				+0.6
4,403,577	+				-0.2
4,403,577	+				+0.2
4,403,818	+				-0.0
4,403,826	+				-1.3
4,403,826	+				-0.8
4,403,870	+				-0.8
4,403,870	+				-0.4
4,403,870	+				-0.0
4,403,870	+				-0.7
4,403,870	+				+0.0
4,403,870	+				+1.1
4,403,870	+				+0.6
4,403,870	+				-0.0
4,403,874	+				-2.3
4,403,876	+				-0.1
4,403,880	+				-0.2
4,403,880	+				-0.9
4,403,880	+				-0.8
4,403,890	+				-0.8
4,403,916	+				-0.7
4,403,995	+				+1.0
4,403,995	+				-0.3
4,404,003	+				+0.1
4,404,004	-				-0.7
4,404,036	-				-0.6
4,404,044	+				-2.0
4,404,142	-				+0.1
4,404,303	-				+0.3
4,404,303	-				-0.4
4,404,303	-				-0.5
4,404,317	+				+0.0
4,404,317	+				+0.2
4,404,317	+				-0.0
4,404,317	+				+0.6
4,404,318	-				-0.6
4,404,581	+		BPHYT_RS19575	0.22	-0.2
4,404,581	+		BPHYT_RS19575	0.22	-0.4
4,404,582	-		BPHYT_RS19575	0.22	+1.1
4,404,626	+		BPHYT_RS19575	0.24	-1.0
4,404,808	+		BPHYT_RS19575	0.33	-0.1
4,404,808	+		BPHYT_RS19575	0.33	-0.3
4,404,809	-		BPHYT_RS19575	0.34	+0.5
4,405,010	+		BPHYT_RS19575	0.44	-1.3
4,405,010	+		BPHYT_RS19575	0.44	+1.3
4,405,010	+		BPHYT_RS19575	0.44	-0.3
4,405,011	-		BPHYT_RS19575	0.44	-0.2
4,405,152	+		BPHYT_RS19575	0.51	-0.3
4,405,999	+				+0.1
4,405,999	+				-0.2
4,406,039	+				-0.3
4,406,039	+				-1.3
4,406,039	+				+0.9
4,406,039	+				+0.3
4,406,039	+				-0.4
4,406,039	+				-1.1
4,406,040	-				-0.9
4,406,040	-				-1.3
4,406,051	+				-0.1
4,406,253	+				+0.3
4,406,253	+				+0.5
4,406,253	+				-0.2
4,406,254	-				-1.1
4,406,254	-				+0.2
4,406,254	-				-0.6
4,406,254	-				-0.7
4,406,397	+				-0.1
4,406,439	+				-0.3
4,406,439	+				+0.1
4,406,444	+				+0.6
4,406,558	+				-1.9
4,406,559	-				+0.7
4,406,559	-				+0.0
4,406,559	-				-0.7
4,406,561	-				-1.9
4,406,561	-				+0.4
4,406,592	+				-1.2
4,406,859	-		BPHYT_RS19580	0.88	-2.7