Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16350

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,709,454	+		BPHYT_RS16345	0.35	-0.8
3,709,455	-		BPHYT_RS16345	0.36	-3.2
3,709,455	-		BPHYT_RS16345	0.36	-2.6
3,709,655	+		BPHYT_RS16345	0.53	+1.6
3,709,656	-		BPHYT_RS16345	0.53	-2.0
3,709,883	+		BPHYT_RS16345	0.72	+0.4
3,709,884	-		BPHYT_RS16345	0.72	-0.8
3,709,884	-		BPHYT_RS16345	0.72	-3.3
3,709,884	-		BPHYT_RS16345	0.72	-0.6
3,710,192	+				-2.1
3,710,193	-				-1.8
3,710,339	+		BPHYT_RS16350	0.18	-2.4
3,710,340	-		BPHYT_RS16350	0.18	+0.3
3,710,340	-		BPHYT_RS16350	0.18	+0.2
3,710,356	+		BPHYT_RS16350	0.20	-1.2
3,710,357	-		BPHYT_RS16350	0.21	+0.0
3,710,435	+		BPHYT_RS16350	0.31	-3.7
3,710,436	-		BPHYT_RS16350	0.31	-0.4
3,710,666	-				-1.4
3,710,881	+				-1.4
3,710,882	-				-2.0
3,710,882	-				-0.5
3,710,882	-				-0.0
3,710,882	-				+0.4
3,710,989	+				+0.1
3,710,989	+				-0.3
3,710,989	+				+2.1
3,710,990	-				+0.0
3,710,990	-				-3.0
3,710,996	+				+1.7
3,711,054	+				+0.4
3,711,054	+				-0.3
3,711,054	+				-0.0
3,711,054	+				-0.4
3,711,054	+				-1.1
3,711,055	-				+0.4
3,711,055	-				-1.8
3,711,055	-				+0.4
3,711,097	-				-0.8
3,711,320	+		BPHYT_RS16355	0.32	-0.4
3,711,321	-		BPHYT_RS16355	0.32	+1.5
3,711,495	+		BPHYT_RS16355	0.56	-0.3
3,711,510	-		BPHYT_RS16355	0.59	-0.2
3,711,534	-		BPHYT_RS16355	0.62	-0.3
3,711,616	-		BPHYT_RS16355	0.74	-0.0
3,711,797	+				-0.6