Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15990

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,627,747	+				-0.1
3,627,747	+				-0.1
3,627,748	-				+0.3
3,627,748	-				-0.5
3,627,748	-				-1.1
3,627,953	-		BPHYT_RS15985	0.20	-0.1
3,627,953	-		BPHYT_RS15985	0.20	-0.6
3,627,953	-		BPHYT_RS15985	0.20	+0.6
3,628,165	-		BPHYT_RS15985	0.45	+0.5
3,628,307	+		BPHYT_RS15985	0.62	+0.8
3,628,308	-		BPHYT_RS15985	0.62	+1.2
3,628,556	-				-2.1
3,628,917	+		BPHYT_RS15990	0.24	+0.5
3,629,161	-		BPHYT_RS15990	0.52	-0.1
3,629,289	+		BPHYT_RS15990	0.67	+0.3
3,629,290	-		BPHYT_RS15990	0.67	+0.4
3,629,539	+				-0.3
3,629,539	+				-0.5
3,629,540	-				-0.4
3,629,540	-				-2.2
3,629,622	+				+0.1
3,629,635	-				-0.2
3,629,657	+				+0.6
3,629,693	+				+0.2
3,629,694	-				+0.2
3,629,758	+				-1.0
3,629,762	+				+0.3
3,629,763	-				-0.6
3,629,764	+				-1.1
3,629,764	+				-0.3
3,629,778	+				+0.2
3,629,778	+				-0.5