Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15980

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,625,811	-		BPHYT_RS15975	0.11	+1.6
3,625,926	-		BPHYT_RS15975	0.24	+0.4
3,625,956	-		BPHYT_RS15975	0.28	-0.1
3,626,197	+		BPHYT_RS15975	0.55	+0.1
3,626,351	+		BPHYT_RS15975	0.73	-1.8
3,626,351	+		BPHYT_RS15975	0.73	+2.2
3,626,351	+		BPHYT_RS15975	0.73	+0.1
3,626,351	+		BPHYT_RS15975	0.73	+0.2
3,626,351	+		BPHYT_RS15975	0.73	+2.2
3,626,352	-		BPHYT_RS15975	0.73	+1.7
3,626,352	-		BPHYT_RS15975	0.73	-0.6
3,626,352	-		BPHYT_RS15975	0.73	+0.4
3,626,352	-		BPHYT_RS15975	0.73	+0.6
3,626,557	+				-1.1
3,626,557	+				+0.1
3,626,558	-				-0.2
3,626,627	+				+1.4
3,626,720	-				-0.4
3,626,720	-				+0.8
3,626,951	+		BPHYT_RS15980	0.20	+0.2
3,626,973	+		BPHYT_RS15980	0.23	-1.0
3,626,974	-		BPHYT_RS15980	0.23	-0.0
3,626,974	-		BPHYT_RS15980	0.23	+0.5
3,626,974	-		BPHYT_RS15980	0.23	+0.4
3,627,300	+		BPHYT_RS15980	0.60	+1.4
3,627,301	-		BPHYT_RS15980	0.60	-0.3
3,627,370	-		BPHYT_RS15980	0.68	-0.2
3,627,370	-		BPHYT_RS15980	0.68	-0.5
3,627,659	+				+0.0
3,627,684	+				-0.4
3,627,684	+				-0.6
3,627,684	+				-3.1
3,627,684	+				+0.2
3,627,685	-				+0.3
3,627,685	-				-0.9
3,627,685	-				+0.6
3,627,685	-				-0.3
3,627,747	+				-0.1
3,627,747	+				-0.1
3,627,748	-				+0.3
3,627,748	-				-0.5
3,627,748	-				-1.1
3,627,953	-		BPHYT_RS15985	0.20	-0.1
3,627,953	-		BPHYT_RS15985	0.20	-0.6
3,627,953	-		BPHYT_RS15985	0.20	+0.6
3,628,165	-		BPHYT_RS15985	0.45	+0.5
3,628,307	+		BPHYT_RS15985	0.62	+0.8
3,628,308	-		BPHYT_RS15985	0.62	+1.2
3,628,556	-				-2.1