Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15665

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,551,606	+		BPHYT_RS15660	0.43	-2.0
3,551,607	-		BPHYT_RS15660	0.43	-0.6
3,551,607	-		BPHYT_RS15660	0.43	-0.6
3,551,607	-		BPHYT_RS15660	0.43	-2.6
3,551,683	-		BPHYT_RS15660	0.48	+0.6
3,551,854	+		BPHYT_RS15660	0.61	-0.2
3,551,868	+		BPHYT_RS15660	0.62	+1.0
3,551,869	-		BPHYT_RS15660	0.62	+5.7
3,552,369	+				+3.5
3,552,369	+				+0.5
3,552,369	+				-0.5
3,552,369	+				-1.7
3,552,369	+				-0.6
3,552,369	+				-0.0
3,552,370	-				-0.2
3,552,370	-				+1.1
3,552,370	-				-0.2
3,552,370	-				+0.0
3,552,370	-				-0.5
3,552,470	+				-0.7
3,552,470	+				+0.1
3,552,471	-				+0.3
3,552,471	-				-0.4
3,552,539	+				-2.0
3,553,353	-		BPHYT_RS15665	0.70	-1.1
3,553,782	-				-4.7
3,553,782	-				-1.9
3,553,847	-		BPHYT_RS15670	0.19	-2.7
3,553,851	-		BPHYT_RS15670	0.19	-2.7
3,553,851	-		BPHYT_RS15670	0.19	-2.0
3,554,077	+		BPHYT_RS15670	0.54	-2.5
3,554,148	-		BPHYT_RS15670	0.65	-1.8
3,554,390	-				-0.1
3,554,390	-				+1.0
3,554,445	-				-0.4
3,554,445	-				+0.2
3,554,445	-				-0.7