Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15650

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS15640 and BPHYT_RS15645 are separated by 91 nucleotidesBPHYT_RS15645 and BPHYT_RS15650 overlap by 1 nucleotidesBPHYT_RS15650 and BPHYT_RS15655 are separated by 130 nucleotides BPHYT_RS15640: BPHYT_RS15640 - L-aspartate oxidase, at 3,545,780 to 3,547,378 _RS15640 BPHYT_RS15645: BPHYT_RS15645 - nicotinate-nucleotide pyrophosphorylase, at 3,547,470 to 3,548,369 _RS15645 BPHYT_RS15650: BPHYT_RS15650 - quinolinate synthetase, at 3,548,369 to 3,549,508 _RS15650 BPHYT_RS15655: BPHYT_RS15655 - aminotransferase, at 3,549,639 to 3,550,835 _RS15655 Position (kb) 3548 3549 3550Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3547.825 kb on + strand, within BPHYT_RS15645at 3547.825 kb on + strand, within BPHYT_RS15645at 3547.826 kb on - strand, within BPHYT_RS15645at 3547.826 kb on - strand, within BPHYT_RS15645at 3547.826 kb on - strand, within BPHYT_RS15645at 3547.828 kb on - strand, within BPHYT_RS15645at 3547.871 kb on - strand, within BPHYT_RS15645at 3547.931 kb on + strand, within BPHYT_RS15645at 3547.952 kb on - strand, within BPHYT_RS15645at 3548.100 kb on - strand, within BPHYT_RS15645at 3548.100 kb on - strand, within BPHYT_RS15645at 3548.100 kb on - strand, within BPHYT_RS15645at 3548.265 kb on + strand, within BPHYT_RS15645at 3548.311 kb on + strandat 3548.391 kb on + strandat 3548.392 kb on - strandat 3548.631 kb on - strand, within BPHYT_RS15650at 3548.846 kb on - strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.920 kb on - strand, within BPHYT_RS15650at 3548.920 kb on - strand, within BPHYT_RS15650at 3548.920 kb on - strand, within BPHYT_RS15650at 3548.920 kb on - strand, within BPHYT_RS15650at 3549.054 kb on + strand, within BPHYT_RS15650at 3549.055 kb on - strand, within BPHYT_RS15650at 3549.324 kb on + strand, within BPHYT_RS15650at 3549.324 kb on + strand, within BPHYT_RS15650at 3549.325 kb on - strand, within BPHYT_RS15650at 3549.325 kb on - strand, within BPHYT_RS15650at 3549.325 kb on - strand, within BPHYT_RS15650at 3549.325 kb on - strand, within BPHYT_RS15650at 3549.327 kb on + strand, within BPHYT_RS15650at 3549.327 kb on + strand, within BPHYT_RS15650at 3549.328 kb on - strand, within BPHYT_RS15650at 3549.328 kb on - strand, within BPHYT_RS15650at 3549.328 kb on - strand, within BPHYT_RS15650at 3549.624 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
remove
3,547,825 + BPHYT_RS15645 0.39 -1.7
3,547,825 + BPHYT_RS15645 0.39 -3.7
3,547,826 - BPHYT_RS15645 0.40 -4.8
3,547,826 - BPHYT_RS15645 0.40 -3.6
3,547,826 - BPHYT_RS15645 0.40 +0.1
3,547,828 - BPHYT_RS15645 0.40 -1.8
3,547,871 - BPHYT_RS15645 0.45 -2.5
3,547,931 + BPHYT_RS15645 0.51 -4.4
3,547,952 - BPHYT_RS15645 0.54 -2.9
3,548,100 - BPHYT_RS15645 0.70 -4.2
3,548,100 - BPHYT_RS15645 0.70 -1.9
3,548,100 - BPHYT_RS15645 0.70 -3.4
3,548,265 + BPHYT_RS15645 0.88 -3.0
3,548,311 + -4.5
3,548,391 + -2.0
3,548,392 - -2.7
3,548,631 - BPHYT_RS15650 0.23 -3.4
3,548,846 - BPHYT_RS15650 0.42 -5.7
3,548,919 + BPHYT_RS15650 0.48 -1.3
3,548,919 + BPHYT_RS15650 0.48 -2.2
3,548,919 + BPHYT_RS15650 0.48 -3.0
3,548,919 + BPHYT_RS15650 0.48 -2.6
3,548,919 + BPHYT_RS15650 0.48 -4.2
3,548,920 - BPHYT_RS15650 0.48 -2.2
3,548,920 - BPHYT_RS15650 0.48 -4.5
3,548,920 - BPHYT_RS15650 0.48 -3.3
3,548,920 - BPHYT_RS15650 0.48 -3.6
3,549,054 + BPHYT_RS15650 0.60 -3.6
3,549,055 - BPHYT_RS15650 0.60 -2.5
3,549,324 + BPHYT_RS15650 0.84 -4.5
3,549,324 + BPHYT_RS15650 0.84 -1.7
3,549,325 - BPHYT_RS15650 0.84 -4.1
3,549,325 - BPHYT_RS15650 0.84 -1.9
3,549,325 - BPHYT_RS15650 0.84 -0.9
3,549,325 - BPHYT_RS15650 0.84 -4.2
3,549,327 + BPHYT_RS15650 0.84 -3.7
3,549,327 + BPHYT_RS15650 0.84 -4.2
3,549,328 - BPHYT_RS15650 0.84 -3.4
3,549,328 - BPHYT_RS15650 0.84 -4.7
3,549,328 - BPHYT_RS15650 0.84 -0.9
3,549,624 + -1.6

Or see this region's nucleotide sequence