Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14485

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,300,339	-		BPHYT_RS14480	0.81	-1.5
3,300,400	-		BPHYT_RS14480	0.87	+0.4
3,300,400	-		BPHYT_RS14480	0.87	-0.0
3,300,400	-		BPHYT_RS14480	0.87	+0.5
3,300,518	-				+0.4
3,300,544	+				-1.9
3,301,179	+				-0.7
3,301,179	+				-0.6
3,301,179	+				+0.2
3,302,819	-		BPHYT_RS14485	0.47	-0.1
3,303,830	+		BPHYT_RS14485	0.78	-0.8
3,303,831	-		BPHYT_RS14485	0.78	-1.9
3,303,831	-		BPHYT_RS14485	0.78	+0.9
3,303,935	+		BPHYT_RS14485	0.81	-1.3
3,304,558	+				-0.2
3,304,719	+				+0.5
3,304,720	-				-2.1
3,304,926	+		BPHYT_RS14490	0.14	-0.1
3,304,959	+		BPHYT_RS14490	0.17	-0.9
3,304,959	+		BPHYT_RS14490	0.17	-0.4
3,304,959	+		BPHYT_RS14490	0.17	-0.5
3,304,959	+		BPHYT_RS14490	0.17	-0.3
3,305,072	-		BPHYT_RS14490	0.27	+2.3
3,305,072	-		BPHYT_RS14490	0.27	+1.3
3,305,251	+		BPHYT_RS14490	0.43	-1.6
3,305,252	-		BPHYT_RS14490	0.43	-0.7
3,305,439	+		BPHYT_RS14490	0.60	-0.4
3,305,440	-		BPHYT_RS14490	0.60	-0.7
3,305,440	-		BPHYT_RS14490	0.60	-0.1
3,305,440	-		BPHYT_RS14490	0.60	-0.2