Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12940

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,952,951	+		BPHYT_RS12935	0.42	-1.9
2,952,952	-		BPHYT_RS12935	0.42	-0.6
2,952,952	-		BPHYT_RS12935	0.42	+4.1
2,953,059	+		BPHYT_RS12935	0.49	-1.0
2,953,291	+		BPHYT_RS12935	0.64	+0.5
2,953,396	+		BPHYT_RS12935	0.71	-1.8
2,953,540	-		BPHYT_RS12935	0.81	-0.7
2,953,834	+				-2.6
2,953,859	-				+0.1
2,953,859	-				-0.7
2,953,872	+				-0.6
2,953,872	+				+0.2
2,953,872	+				+1.2
2,953,873	-				+0.7
2,953,873	-				-2.9
2,953,873	-				+0.5
2,953,873	-				+0.3
2,953,873	-				+0.1
2,953,873	-				+0.5
2,953,880	+				-0.3
2,953,881	-				-0.9
2,953,881	-				+1.3
2,954,172	+		BPHYT_RS12940	0.26	-1.9
2,954,173	-		BPHYT_RS12940	0.26	-0.3
2,954,270	+		BPHYT_RS12940	0.34	-0.5
2,954,608	+		BPHYT_RS12940	0.64	-1.3
2,954,610	+		BPHYT_RS12940	0.64	+0.3
2,954,611	-		BPHYT_RS12940	0.64	-0.2
2,954,645	+		BPHYT_RS12940	0.67	-0.1
2,954,645	+		BPHYT_RS12940	0.67	-1.7
2,954,646	-		BPHYT_RS12940	0.67	+0.1
2,954,953	+				-1.0
2,955,069	+				-1.0
2,955,070	-				-0.2
2,955,206	+				-0.7