Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12150

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,767,348	+				-1.7
2,767,348	+				+0.3
2,767,348	+				+0.2
2,767,349	-				+1.1
2,767,349	-				-2.9
2,767,349	-				-0.6
2,767,369	+				-0.6
2,767,369	+				+0.2
2,767,370	-				+0.1
2,767,398	+				-0.2
2,767,402	-				+0.5
2,767,471	+				+0.1
2,767,471	+				-0.4
2,767,471	+				+0.2
2,767,534	+		BPHYT_RS12145	0.17	-0.1
2,767,534	+		BPHYT_RS12145	0.17	-0.3
2,767,534	+		BPHYT_RS12145	0.17	-0.3
2,767,535	-		BPHYT_RS12145	0.18	-0.8
2,767,535	-		BPHYT_RS12145	0.18	-0.4
2,767,577	-		BPHYT_RS12145	0.23	-0.2
2,767,577	-		BPHYT_RS12145	0.23	-1.0
2,767,717	+		BPHYT_RS12145	0.40	-0.6
2,767,718	-		BPHYT_RS12145	0.40	-1.1
2,767,906	+		BPHYT_RS12145	0.63	-0.5
2,767,931	+		BPHYT_RS12145	0.66	+0.3
2,767,960	+		BPHYT_RS12145	0.70	-0.7
2,767,961	-		BPHYT_RS12145	0.70	+1.3
2,768,043	+		BPHYT_RS12145	0.80	-0.6
2,768,112	+		BPHYT_RS12145	0.89	+0.6
2,768,112	+		BPHYT_RS12145	0.89	+1.0
2,768,113	-		BPHYT_RS12145	0.89	-0.0
2,768,113	-		BPHYT_RS12145	0.89	+0.5
2,768,113	-		BPHYT_RS12145	0.89	+0.3
2,768,239	-				-0.4
2,768,239	-				-0.9
2,768,239	-				+0.3
2,768,239	-				-0.5
2,768,287	+				-0.7
2,768,287	+				-0.1
2,768,288	-				-1.0
2,768,288	-				+0.3
2,768,430	-				+1.6
2,768,430	-				-3.3
2,768,544	+		BPHYT_RS12150	0.12	-2.3
2,768,668	-		BPHYT_RS12150	0.17	+1.6
2,768,886	+		BPHYT_RS12150	0.25	-2.9
2,768,887	-		BPHYT_RS12150	0.25	-1.1
2,768,887	-		BPHYT_RS12150	0.25	-1.0
2,768,990	+		BPHYT_RS12150	0.29	-0.1
2,768,991	-		BPHYT_RS12150	0.29	+0.6
2,768,991	-		BPHYT_RS12150	0.29	+1.6
2,768,991	-		BPHYT_RS12150	0.29	-2.8
2,769,106	+		BPHYT_RS12150	0.34	+1.0
2,769,106	+		BPHYT_RS12150	0.34	-1.0
2,769,109	+		BPHYT_RS12150	0.34	-1.5
2,769,109	+		BPHYT_RS12150	0.34	-1.7
2,769,109	+		BPHYT_RS12150	0.34	-1.6
2,769,110	-		BPHYT_RS12150	0.34	-0.7
2,769,110	-		BPHYT_RS12150	0.34	-0.1
2,769,110	-		BPHYT_RS12150	0.34	-0.6
2,769,195	+		BPHYT_RS12150	0.37	-2.1
2,769,195	+		BPHYT_RS12150	0.37	-0.0
2,769,196	-		BPHYT_RS12150	0.37	+0.8
2,769,304	+		BPHYT_RS12150	0.42	-1.7
2,769,358	+		BPHYT_RS12150	0.44	-1.5
2,769,496	+		BPHYT_RS12150	0.49	-0.9
2,769,544	+		BPHYT_RS12150	0.51	+0.3
2,769,544	+		BPHYT_RS12150	0.51	-2.0
2,769,544	+		BPHYT_RS12150	0.51	-1.9
2,769,545	-		BPHYT_RS12150	0.51	-1.8
2,769,545	-		BPHYT_RS12150	0.51	+3.6
2,769,553	+		BPHYT_RS12150	0.51	+0.8
2,769,554	-		BPHYT_RS12150	0.51	-0.2
2,769,554	-		BPHYT_RS12150	0.51	+2.6
2,769,554	-		BPHYT_RS12150	0.51	+1.8
2,769,679	+		BPHYT_RS12150	0.56	-2.1
2,769,680	-		BPHYT_RS12150	0.56	-0.2
2,769,680	-		BPHYT_RS12150	0.56	-2.1
2,769,858	+		BPHYT_RS12150	0.63	-1.5
2,769,928	+		BPHYT_RS12150	0.66	-1.4
2,769,929	-		BPHYT_RS12150	0.66	-3.0
2,769,929	-		BPHYT_RS12150	0.66	-1.3
2,770,288	+		BPHYT_RS12150	0.80	-2.7
2,770,288	+		BPHYT_RS12150	0.80	-0.2
2,770,288	+		BPHYT_RS12150	0.80	-1.6
2,770,289	-		BPHYT_RS12150	0.80	-1.7
2,770,289	-		BPHYT_RS12150	0.80	-1.4
2,770,330	+		BPHYT_RS12150	0.81	-1.0
2,770,331	-		BPHYT_RS12150	0.81	-1.2
2,770,401	+		BPHYT_RS12150	0.84	-4.4
2,770,438	+		BPHYT_RS12150	0.85	-1.7
2,770,446	+		BPHYT_RS12150	0.86	-0.7
2,770,597	+				+1.6
2,770,597	+				-0.9
2,770,597	+				-1.1
2,770,598	-				-0.1
2,770,600	+				-1.4
2,770,600	+				-0.2
2,770,600	+				-2.5
2,770,600	+				+1.0
2,770,600	+				-0.7
2,770,600	+				-0.4
2,770,600	+				+0.7
2,770,600	+				-0.3
2,770,600	+				-2.0
2,770,601	-				+1.6
2,770,601	-				-1.5
2,770,601	-				-1.4
2,770,601	-				-0.7
2,770,643	-				-1.9
2,770,903	-				-0.3
2,771,226	+				-0.6
2,771,226	+				-0.1
2,771,335	+				+0.6