Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09500

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,150,903	-				+0.6
2,150,903	-				+0.5
2,150,917	+				+0.4
2,150,918	-				+1.0
2,151,034	+		BPHYT_RS09495	0.21	+0.5
2,151,035	-		BPHYT_RS09495	0.21	-0.1
2,151,068	+		BPHYT_RS09495	0.26	+1.0
2,151,687	-				-0.4
2,151,919	+		BPHYT_RS09500	0.12	-3.4
2,151,920	-		BPHYT_RS09500	0.12	-6.6
2,152,324	+		BPHYT_RS09500	0.37	-3.6
2,152,325	-		BPHYT_RS09500	0.37	-3.5
2,152,354	+		BPHYT_RS09500	0.39	-1.9
2,152,945	+		BPHYT_RS09500	0.75	-3.6
2,153,020	+		BPHYT_RS09500	0.80	-0.4
2,153,305	+				-3.1
2,153,306	-				-2.8
2,153,352	-				-1.5
2,153,427	+				-3.6
2,153,427	+				-2.7
2,153,428	-				-0.0
2,153,428	-				-0.0
2,153,519	+				-1.2
2,153,519	+				-0.4
2,153,519	+				-0.9
2,153,717	-				-0.6
2,153,886	+		BPHYT_RS09505	0.19	+0.6
2,153,886	+		BPHYT_RS09505	0.19	-0.2
2,153,887	-		BPHYT_RS09505	0.19	+0.4
2,154,021	+		BPHYT_RS09505	0.27	-0.5
2,154,021	+		BPHYT_RS09505	0.27	+0.4
2,154,021	+		BPHYT_RS09505	0.27	+1.1
2,154,021	+		BPHYT_RS09505	0.27	-0.2
2,154,021	+		BPHYT_RS09505	0.27	+0.1
2,154,022	-		BPHYT_RS09505	0.27	+0.6
2,154,244	+		BPHYT_RS09505	0.41	+0.6