Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08960

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,027,654	-		BPHYT_RS08955	0.37	-2.9
2,027,834	-		BPHYT_RS08955	0.51	-3.2
2,027,875	+		BPHYT_RS08955	0.54	+0.3
2,028,050	-		BPHYT_RS08955	0.67	-2.1
2,028,126	+		BPHYT_RS08955	0.73	-1.7
2,028,226	+		BPHYT_RS08955	0.80	-4.2
2,028,227	-		BPHYT_RS08955	0.80	-2.8
2,028,227	-		BPHYT_RS08955	0.80	-3.1
2,028,484	+				-0.9
2,028,485	-				-2.2
2,028,485	-				-1.6
2,028,494	+				-0.2
2,028,494	+				-2.2
2,028,588	+				-1.5
2,028,750	+		BPHYT_RS08960	0.18	-2.2
2,029,176	+		BPHYT_RS08960	0.47	+0.1
2,029,450	-		BPHYT_RS08960	0.66	-0.1
2,029,945	-				+0.9
2,030,204	+				-1.2
2,030,205	-				-1.7
2,030,209	+				+0.5
2,030,209	+				-0.2
2,030,218	-				-0.2
2,030,856	+		BPHYT_RS08965	0.47	+0.5
2,030,857	-		BPHYT_RS08965	0.47	-0.3
2,030,920	-		BPHYT_RS08965	0.52	-0.1