Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06005

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,367,147	+				+0.1
1,367,148	-				-1.5
1,367,152	+				+0.7
1,367,153	-				-1.1
1,367,261	+				-0.7
1,367,261	+				+0.0
1,367,280	+				+0.1
1,367,280	+				-0.2
1,367,343	+		BPHYT_RS06000	0.16	+0.3
1,367,369	+		BPHYT_RS06000	0.21	+0.4
1,367,392	-		BPHYT_RS06000	0.26	+0.1
1,367,468	+		BPHYT_RS06000	0.41	+0.3
1,367,469	-		BPHYT_RS06000	0.41	+1.1
1,367,495	+		BPHYT_RS06000	0.46	+0.0
1,367,880	+				-1.8
1,367,993	+				+0.9
1,367,993	+				+0.3
1,367,994	-				+0.3
1,368,275	-		BPHYT_RS06005	0.39	-1.2
1,368,275	-		BPHYT_RS06005	0.39	+0.1
1,368,357	-		BPHYT_RS06005	0.51	-1.4
1,368,357	-		BPHYT_RS06005	0.51	-0.8
1,368,358	+		BPHYT_RS06005	0.52	+0.1
1,368,364	+		BPHYT_RS06005	0.52	-0.7
1,368,729	+				+0.6
1,368,781	+		BPHYT_RS06010	0.20	-0.6
1,368,782	-		BPHYT_RS06010	0.20	-1.2
1,368,782	-		BPHYT_RS06010	0.20	-0.1
1,368,784	+		BPHYT_RS06010	0.20	+0.2
1,368,784	+		BPHYT_RS06010	0.20	+0.2
1,368,785	-		BPHYT_RS06010	0.20	+0.5
1,369,083	-		BPHYT_RS06010	0.83	+0.8
1,369,110	+		BPHYT_RS06010	0.89	-0.8
1,369,110	+		BPHYT_RS06010	0.89	+0.2
1,369,110	+		BPHYT_RS06010	0.89	+0.3
1,369,110	+		BPHYT_RS06010	0.89	+0.4
1,369,111	-		BPHYT_RS06010	0.89	-0.9
1,369,111	-		BPHYT_RS06010	0.89	-0.7
1,369,111	-		BPHYT_RS06010	0.89	-1.1
1,369,155	+				-0.4
1,369,155	+				+0.2
1,369,155	+				+0.1
1,369,155	+				+1.7
1,369,155	+				-0.2
1,369,156	-				+0.1
1,369,156	-				-0.4
1,369,156	-				+0.5
1,369,247	+				+0.7
1,369,248	-				-0.0
1,369,484	+		BPHYT_RS06015	0.35	+0.6