Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05625

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,287,607	-				-1.3
1,287,831	-		BPHYT_RS05615	0.54	-0.8
1,287,886	+		BPHYT_RS05615	0.71	-0.1
1,287,886	+		BPHYT_RS05615	0.71	+0.1
1,288,144	+				+0.6
1,288,296	+		BPHYT_RS05620	0.72	-0.7
1,288,419	+				-0.0
1,288,447	+				+0.3
1,288,508	+				-0.0
1,288,582	-		BPHYT_RS05625	0.18	+1.8
1,288,722	+		BPHYT_RS05625	0.81	-0.5
1,288,725	-		BPHYT_RS05625	0.82	-1.1
1,288,725	-		BPHYT_RS05625	0.82	+0.2
1,288,761	+				+0.1
1,288,762	-				+0.3
1,288,819	+				+0.3
1,288,820	-				-0.2
1,288,883	+				-1.0
1,288,979	-				+1.0
1,289,274	+		BPHYT_RS05630	0.40	-0.9
1,289,274	+		BPHYT_RS05630	0.40	+0.5
1,289,326	-		BPHYT_RS05630	0.48	-0.0
1,289,419	-		BPHYT_RS05630	0.61	-0.5
1,289,446	-		BPHYT_RS05630	0.65	+0.2
1,289,477	-		BPHYT_RS05630	0.69	-0.2
1,289,477	-		BPHYT_RS05630	0.69	-0.3
1,289,562	-		BPHYT_RS05630	0.81	-1.6
1,289,676	-				+0.1
1,289,682	-				+0.8
1,289,682	-				-1.0