Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05055

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05050 and BPHYT_RS05055 are separated by 278 nucleotidesBPHYT_RS05055 and BPHYT_RS05060 are separated by 66 nucleotidesBPHYT_RS05060 and BPHYT_RS05065 are separated by 13 nucleotides BPHYT_RS05050: BPHYT_RS05050 - glutathione S-transferase, at 1,164,011 to 1,164,670 _RS05050 BPHYT_RS05055: BPHYT_RS05055 - flagellar hook protein FliD, at 1,164,949 to 1,166,457 _RS05055 BPHYT_RS05060: BPHYT_RS05060 - membrane protein, at 1,166,524 to 1,167,144 _RS05060 BPHYT_RS05065: BPHYT_RS05065 - DNA mismatch repair protein MutS, at 1,167,158 to 1,167,916 _RS05065 Position (kb) 1164 1165 1166 1167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1164.255 kb on + strand, within BPHYT_RS05050at 1164.330 kb on + strand, within BPHYT_RS05050at 1164.360 kb on + strand, within BPHYT_RS05050at 1164.360 kb on + strand, within BPHYT_RS05050at 1164.361 kb on - strandat 1164.361 kb on - strand, within BPHYT_RS05050at 1164.361 kb on - strand, within BPHYT_RS05050at 1164.361 kb on - strand, within BPHYT_RS05050at 1164.634 kb on - strandat 1164.654 kb on + strandat 1164.691 kb on - strandat 1164.782 kb on + strandat 1164.802 kb on - strandat 1164.817 kb on + strandat 1164.853 kb on - strandat 1164.934 kb on + strandat 1164.934 kb on + strandat 1165.303 kb on + strand, within BPHYT_RS05055at 1165.304 kb on - strand, within BPHYT_RS05055at 1165.304 kb on - strand, within BPHYT_RS05055at 1165.304 kb on - strand, within BPHYT_RS05055at 1165.599 kb on - strand, within BPHYT_RS05055at 1165.599 kb on - strand, within BPHYT_RS05055at 1165.897 kb on + strand, within BPHYT_RS05055at 1165.898 kb on - strand, within BPHYT_RS05055at 1165.898 kb on - strand, within BPHYT_RS05055at 1165.898 kb on - strand, within BPHYT_RS05055at 1165.936 kb on + strand, within BPHYT_RS05055at 1166.143 kb on - strandat 1166.314 kb on + strandat 1166.398 kb on + strandat 1166.520 kb on - strandat 1166.520 kb on - strandat 1166.603 kb on + strand, within BPHYT_RS05060at 1166.603 kb on + strand, within BPHYT_RS05060at 1166.639 kb on + strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.640 kb on - strand, within BPHYT_RS05060at 1166.815 kb on + strand, within BPHYT_RS05060at 1166.815 kb on + strand, within BPHYT_RS05060at 1166.815 kb on + strand, within BPHYT_RS05060at 1166.816 kb on - strand, within BPHYT_RS05060at 1166.816 kb on - strand, within BPHYT_RS05060at 1166.816 kb on - strand, within BPHYT_RS05060at 1166.937 kb on - strand, within BPHYT_RS05060at 1166.958 kb on - strand, within BPHYT_RS05060at 1167.299 kb on + strand, within BPHYT_RS05065at 1167.300 kb on - strand, within BPHYT_RS05065

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,164,255 + BPHYT_RS05050 0.37 +0.0
1,164,330 + BPHYT_RS05050 0.48 -1.1
1,164,360 + BPHYT_RS05050 0.53 -0.1
1,164,360 + BPHYT_RS05050 0.53 -0.0
1,164,361 - -3.4
1,164,361 - BPHYT_RS05050 0.53 -1.0
1,164,361 - BPHYT_RS05050 0.53 +0.1
1,164,361 - BPHYT_RS05050 0.53 +1.2
1,164,634 - -1.2
1,164,654 + -0.2
1,164,691 - -0.7
1,164,782 + -0.2
1,164,802 - -1.7
1,164,817 + +0.2
1,164,853 - -0.0
1,164,934 + -0.4
1,164,934 + +0.3
1,165,303 + BPHYT_RS05055 0.23 -0.0
1,165,304 - BPHYT_RS05055 0.24 -0.2
1,165,304 - BPHYT_RS05055 0.24 +0.6
1,165,304 - BPHYT_RS05055 0.24 -0.7
1,165,599 - BPHYT_RS05055 0.43 -0.3
1,165,599 - BPHYT_RS05055 0.43 -1.2
1,165,897 + BPHYT_RS05055 0.63 -2.7
1,165,898 - BPHYT_RS05055 0.63 +0.1
1,165,898 - BPHYT_RS05055 0.63 +2.3
1,165,898 - BPHYT_RS05055 0.63 -1.0
1,165,936 + BPHYT_RS05055 0.65 +0.5
1,166,143 - -1.2
1,166,314 + -0.8
1,166,398 + +1.0
1,166,520 - -1.2
1,166,520 - -3.8
1,166,603 + BPHYT_RS05060 0.13 -0.2
1,166,603 + BPHYT_RS05060 0.13 -0.2
1,166,639 + BPHYT_RS05060 0.19 -0.6
1,166,640 - BPHYT_RS05060 0.19 -0.3
1,166,640 - BPHYT_RS05060 0.19 -0.9
1,166,640 - BPHYT_RS05060 0.19 +0.1
1,166,640 - BPHYT_RS05060 0.19 +1.6
1,166,640 - BPHYT_RS05060 0.19 +0.5
1,166,815 + BPHYT_RS05060 0.47 -0.0
1,166,815 + BPHYT_RS05060 0.47 +0.9
1,166,815 + BPHYT_RS05060 0.47 -1.0
1,166,816 - BPHYT_RS05060 0.47 -0.1
1,166,816 - BPHYT_RS05060 0.47 +0.0
1,166,816 - BPHYT_RS05060 0.47 +0.7
1,166,937 - BPHYT_RS05060 0.67 -1.8
1,166,958 - BPHYT_RS05060 0.70 +0.3
1,167,299 + BPHYT_RS05065 0.19 -1.8
1,167,300 - BPHYT_RS05065 0.19 -0.2

Or see this region's nucleotide sequence