Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04905

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,127,586	+		BPHYT_RS04900	0.57	-1.6
1,127,600	+		BPHYT_RS04900	0.58	-1.0
1,128,039	+		BPHYT_RS04900	0.88	-1.7
1,128,301	-				-0.3
1,128,303	-				+1.3
1,128,303	-				-1.0
1,128,401	+				-0.2
1,128,402	-				+0.4
1,128,402	-				-1.3
1,128,431	-		BPHYT_RS04905	0.15	+0.2
1,128,524	-		BPHYT_RS04905	0.38	-0.3
1,128,524	-		BPHYT_RS04905	0.38	-0.6
1,128,896	-				-0.9
1,128,996	-				+0.2
1,129,012	-				-0.7
1,129,012	-				+0.0
1,129,067	-		BPHYT_RS04910	0.18	-0.3
1,129,458	+				-0.6
1,129,458	+				-1.6
1,129,459	-				-0.4
1,129,459	-				-0.2
1,129,499	+				-0.2
1,129,499	+				+1.4
1,129,572	+				-0.2
1,129,572	+				-0.5
1,129,693	+		BPHYT_RS04915	0.11	-0.5