Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04870

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,121,208	+		BPHYT_RS04865	0.71	-1.7
1,121,209	-		BPHYT_RS04865	0.71	+0.8
1,121,310	+		BPHYT_RS04865	0.81	-1.5
1,121,311	-		BPHYT_RS04865	0.81	-0.5
1,121,652	+		BPHYT_RS04870	0.12	-0.6
1,121,692	+		BPHYT_RS04870	0.17	-1.1
1,121,721	+		BPHYT_RS04870	0.21	-1.1
1,121,722	-		BPHYT_RS04870	0.21	-1.1
1,121,850	+		BPHYT_RS04870	0.37	-1.1
1,121,850	+		BPHYT_RS04870	0.37	-0.3
1,122,027	+		BPHYT_RS04870	0.60	-0.3
1,122,028	-		BPHYT_RS04870	0.60	-1.5
1,122,035	+		BPHYT_RS04870	0.61	-1.2
1,122,206	-		BPHYT_RS04870	0.83	-0.9
1,122,229	-		BPHYT_RS04870	0.86	-1.2
1,122,252	+		BPHYT_RS04870	0.89	-0.4
1,122,624	+		BPHYT_RS04875	0.51	-1.8
1,122,749	+		BPHYT_RS04875	0.73	-0.2
1,122,750	-		BPHYT_RS04875	0.73	-0.9
1,122,922	+				+0.8
1,122,922	+				-1.3
1,122,922	+				+0.0
1,122,923	-				-0.7
1,122,923	-				-2.6
1,122,928	-				+0.7
1,122,928	-				+0.8
1,123,316	+		BPHYT_RS04880	0.42	+2.0