Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04720

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,090,078	+		BPHYT_RS04715	0.37	-2.9
1,090,222	+		BPHYT_RS04715	0.49	-0.0
1,090,222	+		BPHYT_RS04715	0.49	-0.5
1,090,247	+		BPHYT_RS04715	0.51	-1.1
1,090,616	-		BPHYT_RS04715	0.83	+0.1
1,090,804	+				-1.3
1,090,829	-				+0.6
1,090,859	+				-0.3
1,090,859	+				-0.1
1,090,860	-				+0.8
1,090,936	-				-1.1
1,090,943	+				-0.8
1,090,943	+				-3.7
1,090,943	+				-2.5
1,090,943	+				-0.3
1,090,944	-		BPHYT_RS04720	0.10	-5.6
1,090,944	-		BPHYT_RS04720	0.10	-3.8
1,091,094	-		BPHYT_RS04720	0.26	+1.8
1,091,201	+		BPHYT_RS04720	0.37	-2.2
1,091,202	-		BPHYT_RS04720	0.37	-1.1
1,091,327	+		BPHYT_RS04720	0.51	-3.2
1,091,328	-		BPHYT_RS04720	0.51	+0.2
1,091,328	-		BPHYT_RS04720	0.51	-4.9
1,091,328	-		BPHYT_RS04720	0.51	-1.5
1,091,475	-		BPHYT_RS04720	0.66	+1.2
1,091,850	-				-0.3
1,091,882	-				-2.3
1,091,887	+				-1.5
1,091,887	+				+0.1
1,091,887	+				-0.3
1,091,896	+				-2.2
1,091,918	-				-0.6
1,092,021	-				-2.9
1,092,029	+				-5.0
1,092,030	-				-3.4
1,092,149	+				-2.9
1,092,165	-				-4.3
1,092,165	-				-3.9
1,092,254	+		BPHYT_RS04725	0.14	-4.3
1,092,287	+		BPHYT_RS04725	0.16	-3.8
1,092,573	-		BPHYT_RS04725	0.33	+0.7
1,092,749	+		BPHYT_RS04725	0.44	-3.7
1,092,749	+		BPHYT_RS04725	0.44	-2.1