Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03870 and BPHYT_RS03875 are separated by 69 nucleotides BPHYT_RS03875 and BPHYT_RS03880 are separated by 70 nucleotides
BPHYT_RS03870: BPHYT_RS03870 - xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) <small>(from data)</small>, at 877,257 to 879,623
_RS03870
BPHYT_RS03875: BPHYT_RS03875 - dehydrogenase, at 879,693 to 880,259
_RS03875
BPHYT_RS03880: BPHYT_RS03880 - LysR family transcriptional regulator, at 880,330 to 881,310
_RS03880
Position (kb) 879
880
881 Strain fitness (log2 ratio) -1
0
1
2 at 878.828 kb on + strand, within BPHYT_RS03870 at 878.828 kb on + strand, within BPHYT_RS03870 at 879.036 kb on + strand, within BPHYT_RS03870 at 879.037 kb on - strand, within BPHYT_RS03870 at 879.037 kb on - strand, within BPHYT_RS03870 at 879.091 kb on - strand, within BPHYT_RS03870 at 879.129 kb on + strand, within BPHYT_RS03870 at 879.130 kb on - strand, within BPHYT_RS03870 at 879.132 kb on + strand, within BPHYT_RS03870 at 879.132 kb on + strand, within BPHYT_RS03870 at 879.354 kb on + strand, within BPHYT_RS03870 at 879.355 kb on - strand, within BPHYT_RS03870 at 879.631 kb on + strand at 879.764 kb on + strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 880.402 kb on - strand at 880.479 kb on - strand, within BPHYT_RS03880 at 880.542 kb on - strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.889 kb on + strand, within BPHYT_RS03880 at 880.989 kb on - strand, within BPHYT_RS03880 at 881.112 kb on - strand, within BPHYT_RS03880
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 878,828 + BPHYT_RS03870 0.66 +0.1 878,828 + BPHYT_RS03870 0.66 -0.9 879,036 + BPHYT_RS03870 0.75 +0.2 879,037 - BPHYT_RS03870 0.75 -0.3 879,037 - BPHYT_RS03870 0.75 +1.3 879,091 - BPHYT_RS03870 0.77 +1.6 879,129 + BPHYT_RS03870 0.79 -0.8 879,130 - BPHYT_RS03870 0.79 -0.3 879,132 + BPHYT_RS03870 0.79 -0.5 879,132 + BPHYT_RS03870 0.79 +1.1 879,354 + BPHYT_RS03870 0.89 +0.6 879,355 - BPHYT_RS03870 0.89 -0.2 879,631 + -0.0 879,764 + BPHYT_RS03875 0.13 -0.7 879,765 - BPHYT_RS03875 0.13 -0.3 879,765 - BPHYT_RS03875 0.13 +1.8 879,765 - BPHYT_RS03875 0.13 +0.9 880,402 - +0.1 880,479 - BPHYT_RS03880 0.15 -0.2 880,542 - BPHYT_RS03880 0.22 +0.2 880,730 + BPHYT_RS03880 0.41 -0.4 880,730 + BPHYT_RS03880 0.41 -0.0 880,730 + BPHYT_RS03880 0.41 -0.1 880,730 + BPHYT_RS03880 0.41 +0.2 880,889 + BPHYT_RS03880 0.57 -0.0 880,989 - BPHYT_RS03880 0.67 +0.3 881,112 - BPHYT_RS03880 0.80 +0.2
Or see this region's nucleotide sequence