Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03795 and BPHYT_RS03800 are separated by 82 nucleotides BPHYT_RS03800 and BPHYT_RS03805 overlap by 4 nucleotides
BPHYT_RS03795: BPHYT_RS03795 - 4-hydroxybenzoate transporter, at 855,960 to 857,324
_RS03795
BPHYT_RS03800: BPHYT_RS03800 - homogentisate 1,2-dioxygenase, at 857,407 to 858,705
_RS03800
BPHYT_RS03805: BPHYT_RS03805 - fumarylacetoacetase, at 858,702 to 860,012
_RS03805
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 856.448 kb on + strand, within BPHYT_RS03795 at 856.794 kb on + strand, within BPHYT_RS03795 at 857.097 kb on + strand, within BPHYT_RS03795 at 857.097 kb on + strand, within BPHYT_RS03795 at 857.355 kb on + strand at 857.356 kb on - strand at 857.507 kb on - strand at 857.562 kb on + strand, within BPHYT_RS03800 at 857.607 kb on + strand, within BPHYT_RS03800 at 857.607 kb on + strand, within BPHYT_RS03800 at 857.608 kb on - strand, within BPHYT_RS03800 at 857.798 kb on - strand, within BPHYT_RS03800 at 857.833 kb on + strand, within BPHYT_RS03800 at 857.833 kb on + strand, within BPHYT_RS03800 at 857.989 kb on + strand, within BPHYT_RS03800 at 858.094 kb on + strand, within BPHYT_RS03800 at 858.202 kb on + strand, within BPHYT_RS03800 at 858.217 kb on + strand, within BPHYT_RS03800 at 858.217 kb on + strand, within BPHYT_RS03800 at 858.218 kb on - strand, within BPHYT_RS03800 at 858.321 kb on + strand, within BPHYT_RS03800 at 858.322 kb on - strand, within BPHYT_RS03800 at 858.369 kb on + strand, within BPHYT_RS03800 at 858.369 kb on + strand, within BPHYT_RS03800 at 858.369 kb on + strand, within BPHYT_RS03800 at 858.484 kb on - strand, within BPHYT_RS03800 at 858.484 kb on - strand, within BPHYT_RS03800 at 858.543 kb on + strand, within BPHYT_RS03800 at 858.544 kb on - strand, within BPHYT_RS03800 at 858.656 kb on - strand at 858.874 kb on + strand, within BPHYT_RS03805 at 858.874 kb on + strand, within BPHYT_RS03805 at 859.287 kb on - strand, within BPHYT_RS03805 at 859.431 kb on - strand, within BPHYT_RS03805 at 859.431 kb on - strand, within BPHYT_RS03805 at 859.488 kb on + strand, within BPHYT_RS03805 at 859.488 kb on + strand, within BPHYT_RS03805 at 859.488 kb on + strand, within BPHYT_RS03805 at 859.488 kb on + strand, within BPHYT_RS03805 at 859.489 kb on - strand, within BPHYT_RS03805 at 859.614 kb on + strand, within BPHYT_RS03805
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 856,448 + BPHYT_RS03795 0.36 +0.4 856,794 + BPHYT_RS03795 0.61 +1.0 857,097 + BPHYT_RS03795 0.83 -0.0 857,097 + BPHYT_RS03795 0.83 -0.1 857,355 + -0.6 857,356 - +0.7 857,507 - -1.2 857,562 + BPHYT_RS03800 0.12 +1.2 857,607 + BPHYT_RS03800 0.15 -0.2 857,607 + BPHYT_RS03800 0.15 -0.3 857,608 - BPHYT_RS03800 0.15 -0.5 857,798 - BPHYT_RS03800 0.30 +0.6 857,833 + BPHYT_RS03800 0.33 +2.3 857,833 + BPHYT_RS03800 0.33 -0.1 857,989 + BPHYT_RS03800 0.45 -0.3 858,094 + BPHYT_RS03800 0.53 -0.6 858,202 + BPHYT_RS03800 0.61 -2.4 858,217 + BPHYT_RS03800 0.62 -0.4 858,217 + BPHYT_RS03800 0.62 +0.2 858,218 - BPHYT_RS03800 0.62 -0.3 858,321 + BPHYT_RS03800 0.70 +1.1 858,322 - BPHYT_RS03800 0.70 -0.5 858,369 + BPHYT_RS03800 0.74 -0.1 858,369 + BPHYT_RS03800 0.74 +0.1 858,369 + BPHYT_RS03800 0.74 +0.5 858,484 - BPHYT_RS03800 0.83 +0.6 858,484 - BPHYT_RS03800 0.83 -1.0 858,543 + BPHYT_RS03800 0.87 +1.1 858,544 - BPHYT_RS03800 0.88 +1.1 858,656 - +0.4 858,874 + BPHYT_RS03805 0.13 +0.0 858,874 + BPHYT_RS03805 0.13 -0.2 859,287 - BPHYT_RS03805 0.45 +1.8 859,431 - BPHYT_RS03805 0.56 -0.4 859,431 - BPHYT_RS03805 0.56 +0.7 859,488 + BPHYT_RS03805 0.60 -0.3 859,488 + BPHYT_RS03805 0.60 +0.1 859,488 + BPHYT_RS03805 0.60 +0.8 859,488 + BPHYT_RS03805 0.60 +3.9 859,489 - BPHYT_RS03805 0.60 -0.2 859,614 + BPHYT_RS03805 0.70 -0.7
Or see this region's nucleotide sequence