Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03645

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03640 and BPHYT_RS03645 are separated by 84 nucleotidesBPHYT_RS03645 and BPHYT_RS03650 are separated by 45 nucleotides BPHYT_RS03640: BPHYT_RS03640 - phosphoribosylformylglycinamidine cyclo-ligase, at 826,890 to 827,957 _RS03640 BPHYT_RS03645: BPHYT_RS03645 - tRNA dimethylallyltransferase, at 828,042 to 828,989 _RS03645 BPHYT_RS03650: BPHYT_RS03650 - DNA mismatch repair protein, at 829,035 to 831,098 _RS03650 Position (kb) 828 829Strain fitness (log2 ratio) -3 -2 -1 0 1at 827.241 kb on + strand, within BPHYT_RS03640at 827.364 kb on + strand, within BPHYT_RS03640at 827.427 kb on - strand, within BPHYT_RS03640at 827.597 kb on + strand, within BPHYT_RS03640at 827.598 kb on - strand, within BPHYT_RS03640at 827.684 kb on + strand, within BPHYT_RS03640at 827.955 kb on + strandat 827.986 kb on + strandat 828.196 kb on + strand, within BPHYT_RS03645at 828.271 kb on - strand, within BPHYT_RS03645at 828.474 kb on - strand, within BPHYT_RS03645at 828.667 kb on + strand, within BPHYT_RS03645at 828.978 kb on - strandat 829.084 kb on + strandat 829.085 kb on - strandat 829.258 kb on + strand, within BPHYT_RS03650at 829.259 kb on - strand, within BPHYT_RS03650at 829.508 kb on - strand, within BPHYT_RS03650at 829.508 kb on - strand, within BPHYT_RS03650at 829.576 kb on + strand, within BPHYT_RS03650at 829.577 kb on - strand, within BPHYT_RS03650at 829.577 kb on - strand, within BPHYT_RS03650at 829.667 kb on - strand, within BPHYT_RS03650

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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827,241 + BPHYT_RS03640 0.33 -2.0
827,364 + BPHYT_RS03640 0.44 -2.8
827,427 - BPHYT_RS03640 0.50 +1.4
827,597 + BPHYT_RS03640 0.66 -0.6
827,598 - BPHYT_RS03640 0.66 +0.0
827,684 + BPHYT_RS03640 0.74 -0.8
827,955 + +0.3
827,986 + -0.3
828,196 + BPHYT_RS03645 0.16 +0.9
828,271 - BPHYT_RS03645 0.24 -1.3
828,474 - BPHYT_RS03645 0.46 -2.3
828,667 + BPHYT_RS03645 0.66 -2.3
828,978 - -0.7
829,084 + -0.5
829,085 - -0.7
829,258 + BPHYT_RS03650 0.11 -1.5
829,259 - BPHYT_RS03650 0.11 -0.1
829,508 - BPHYT_RS03650 0.23 +0.5
829,508 - BPHYT_RS03650 0.23 -0.7
829,576 + BPHYT_RS03650 0.26 -0.7
829,577 - BPHYT_RS03650 0.26 +0.5
829,577 - BPHYT_RS03650 0.26 -0.2
829,667 - BPHYT_RS03650 0.31 +0.7

Or see this region's nucleotide sequence