Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03640

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03635 and BPHYT_RS03640 are separated by 71 nucleotidesBPHYT_RS03640 and BPHYT_RS03645 are separated by 84 nucleotides BPHYT_RS03635: BPHYT_RS03635 - ABC transporter permease, at 825,742 to 826,818 _RS03635 BPHYT_RS03640: BPHYT_RS03640 - phosphoribosylformylglycinamidine cyclo-ligase, at 826,890 to 827,957 _RS03640 BPHYT_RS03645: BPHYT_RS03645 - tRNA dimethylallyltransferase, at 828,042 to 828,989 _RS03645 Position (kb) 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1at 825.963 kb on - strand, within BPHYT_RS03635at 825.990 kb on - strand, within BPHYT_RS03635at 826.056 kb on - strand, within BPHYT_RS03635at 826.137 kb on - strand, within BPHYT_RS03635at 826.182 kb on - strand, within BPHYT_RS03635at 826.296 kb on - strand, within BPHYT_RS03635at 827.241 kb on + strand, within BPHYT_RS03640at 827.364 kb on + strand, within BPHYT_RS03640at 827.427 kb on - strand, within BPHYT_RS03640at 827.597 kb on + strand, within BPHYT_RS03640at 827.598 kb on - strand, within BPHYT_RS03640at 827.684 kb on + strand, within BPHYT_RS03640at 827.955 kb on + strandat 827.986 kb on + strandat 828.196 kb on + strand, within BPHYT_RS03645at 828.271 kb on - strand, within BPHYT_RS03645at 828.474 kb on - strand, within BPHYT_RS03645at 828.667 kb on + strand, within BPHYT_RS03645

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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825,963 - BPHYT_RS03635 0.21 -0.9
825,990 - BPHYT_RS03635 0.23 -1.2
826,056 - BPHYT_RS03635 0.29 +0.3
826,137 - BPHYT_RS03635 0.37 -0.4
826,182 - BPHYT_RS03635 0.41 +0.4
826,296 - BPHYT_RS03635 0.51 +0.3
827,241 + BPHYT_RS03640 0.33 -2.0
827,364 + BPHYT_RS03640 0.44 -2.8
827,427 - BPHYT_RS03640 0.50 +1.4
827,597 + BPHYT_RS03640 0.66 -0.6
827,598 - BPHYT_RS03640 0.66 +0.0
827,684 + BPHYT_RS03640 0.74 -0.8
827,955 + +0.3
827,986 + -0.3
828,196 + BPHYT_RS03645 0.16 +0.9
828,271 - BPHYT_RS03645 0.24 -1.3
828,474 - BPHYT_RS03645 0.46 -2.3
828,667 + BPHYT_RS03645 0.66 -2.3

Or see this region's nucleotide sequence