Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02535 and BPHYT_RS02540 are separated by 121 nucleotides BPHYT_RS02540 and BPHYT_RS02545 are separated by 415 nucleotides BPHYT_RS02545 and BPHYT_RS02550 are separated by 44 nucleotides
BPHYT_RS02535: BPHYT_RS02535 - magnesium chelatase subunit ChlI, at 575,663 to 577,261
_RS02535
BPHYT_RS02540: BPHYT_RS02540 - hypothetical protein, at 577,383 to 577,637
_RS02540
BPHYT_RS02545: BPHYT_RS02545 - nitrogen regulatory protein P-II 1, at 578,053 to 578,391
_RS02545
BPHYT_RS02550: BPHYT_RS02550 - ammonia channel protein, at 578,436 to 579,944
_RS02550
Position (kb) 577
578 Strain fitness (log2 ratio) -1
0
1 at 576.601 kb on + strand, within BPHYT_RS02535 at 576.601 kb on + strand, within BPHYT_RS02535 at 576.654 kb on + strand, within BPHYT_RS02535 at 576.655 kb on - strand, within BPHYT_RS02535 at 576.655 kb on - strand, within BPHYT_RS02535 at 576.771 kb on + strand, within BPHYT_RS02535 at 576.771 kb on + strand, within BPHYT_RS02535 at 576.772 kb on - strand, within BPHYT_RS02535 at 576.772 kb on - strand, within BPHYT_RS02535 at 576.772 kb on - strand, within BPHYT_RS02535 at 577.365 kb on + strand at 577.366 kb on - strand at 577.461 kb on - strand, within BPHYT_RS02540 at 577.614 kb on - strand at 577.725 kb on - strand at 577.791 kb on + strand at 577.791 kb on + strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.805 kb on - strand at 577.805 kb on - strand at 578.018 kb on - strand at 578.038 kb on + strand at 578.039 kb on - strand at 578.189 kb on - strand, within BPHYT_RS02545 at 578.204 kb on - strand, within BPHYT_RS02545 at 578.204 kb on - strand, within BPHYT_RS02545 at 578.390 kb on - strand at 578.403 kb on - strand at 578.414 kb on + strand at 578.415 kb on - strand at 578.415 kb on - strand at 578.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 576,601 + BPHYT_RS02535 0.59 -0.2 576,601 + BPHYT_RS02535 0.59 -0.6 576,654 + BPHYT_RS02535 0.62 -0.3 576,655 - BPHYT_RS02535 0.62 -0.6 576,655 - BPHYT_RS02535 0.62 -0.6 576,771 + BPHYT_RS02535 0.69 -0.4 576,771 + BPHYT_RS02535 0.69 -1.2 576,772 - BPHYT_RS02535 0.69 -0.5 576,772 - BPHYT_RS02535 0.69 -0.2 576,772 - BPHYT_RS02535 0.69 +0.1 577,365 + +0.2 577,366 - -0.6 577,461 - BPHYT_RS02540 0.31 -1.3 577,614 - +0.9 577,725 - -1.0 577,791 + -0.5 577,791 + +0.0 577,792 - -1.3 577,792 - -0.6 577,792 - +0.1 577,792 - -0.7 577,805 - +0.2 577,805 - +0.2 578,018 - +0.5 578,038 + -0.5 578,039 - -0.1 578,189 - BPHYT_RS02545 0.40 -0.7 578,204 - BPHYT_RS02545 0.45 -0.8 578,204 - BPHYT_RS02545 0.45 -0.8 578,390 - +0.4 578,403 - -0.9 578,414 + +1.2 578,415 - +0.7 578,415 - -0.2 578,446 + -0.0
Or see this region's nucleotide sequence