Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02310 and BPHYT_RS02315 are separated by 286 nucleotides BPHYT_RS02315 and BPHYT_RS02320 are separated by 118 nucleotides
BPHYT_RS02310: BPHYT_RS02310 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 529,946 to 531,016
_RS02310
BPHYT_RS02315: BPHYT_RS02315 - hypothetical protein, at 531,303 to 531,560
_RS02315
BPHYT_RS02320: BPHYT_RS02320 - 3-oxoadipate enol-lactonase, at 531,679 to 532,467
_RS02320
Position (kb) 531
532 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.487 kb on + strand, within BPHYT_RS02310 at 530.487 kb on + strand, within BPHYT_RS02310 at 530.491 kb on - strand, within BPHYT_RS02310 at 530.554 kb on + strand, within BPHYT_RS02310 at 530.619 kb on + strand, within BPHYT_RS02310 at 530.884 kb on - strand, within BPHYT_RS02310 at 531.203 kb on - strand at 531.203 kb on - strand at 531.220 kb on + strand at 531.220 kb on + strand at 531.221 kb on - strand at 531.243 kb on + strand at 531.244 kb on - strand at 531.269 kb on + strand at 531.270 kb on - strand at 531.270 kb on - strand at 531.270 kb on - strand at 531.270 kb on - strand at 531.361 kb on - strand, within BPHYT_RS02315 at 531.439 kb on + strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.532 kb on + strand, within BPHYT_RS02315 at 531.532 kb on + strand, within BPHYT_RS02315 at 531.533 kb on - strand, within BPHYT_RS02315 at 531.533 kb on - strand, within BPHYT_RS02315 at 531.547 kb on + strand at 531.547 kb on + strand at 531.548 kb on - strand at 531.573 kb on + strand at 531.574 kb on - strand at 531.606 kb on + strand at 531.606 kb on + strand at 531.607 kb on - strand at 531.617 kb on + strand at 531.618 kb on - strand at 531.680 kb on + strand at 531.796 kb on + strand, within BPHYT_RS02320 at 531.797 kb on - strand, within BPHYT_RS02320 at 531.797 kb on - strand, within BPHYT_RS02320 at 531.807 kb on + strand, within BPHYT_RS02320 at 531.807 kb on + strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.879 kb on + strand, within BPHYT_RS02320 at 531.880 kb on - strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.923 kb on + strand, within BPHYT_RS02320 at 531.924 kb on - strand, within BPHYT_RS02320 at 531.949 kb on + strand, within BPHYT_RS02320 at 531.949 kb on + strand, within BPHYT_RS02320 at 532.206 kb on + strand, within BPHYT_RS02320 at 532.207 kb on - strand, within BPHYT_RS02320 at 532.314 kb on - strand, within BPHYT_RS02320 at 532.329 kb on - strand, within BPHYT_RS02320 at 532.433 kb on + strand at 532.434 kb on - strand at 532.434 kb on - strand at 532.549 kb on + strand at 532.549 kb on + strand at 532.549 kb on + strand at 532.550 kb on - strand at 532.550 kb on - strand at 532.550 kb on - strand at 532.551 kb on + strand at 532.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 530,487 + BPHYT_RS02310 0.51 -0.7 530,487 + BPHYT_RS02310 0.51 -0.9 530,491 - BPHYT_RS02310 0.51 +0.2 530,554 + BPHYT_RS02310 0.57 +0.6 530,619 + BPHYT_RS02310 0.63 -2.2 530,884 - BPHYT_RS02310 0.88 +0.1 531,203 - -1.1 531,203 - +1.9 531,220 + -1.3 531,220 + +0.6 531,221 - +0.2 531,243 + +0.5 531,244 - -0.1 531,269 + +0.1 531,270 - -0.3 531,270 - +1.3 531,270 - -1.3 531,270 - +0.2 531,361 - BPHYT_RS02315 0.22 +0.5 531,439 + BPHYT_RS02315 0.53 +0.5 531,440 - BPHYT_RS02315 0.53 +0.1 531,440 - BPHYT_RS02315 0.53 +0.3 531,440 - BPHYT_RS02315 0.53 +0.0 531,440 - BPHYT_RS02315 0.53 +0.1 531,440 - BPHYT_RS02315 0.53 +0.3 531,440 - BPHYT_RS02315 0.53 -0.1 531,532 + BPHYT_RS02315 0.89 +0.6 531,532 + BPHYT_RS02315 0.89 +0.2 531,533 - BPHYT_RS02315 0.89 -0.3 531,533 - BPHYT_RS02315 0.89 +0.8 531,547 + +0.2 531,547 + +0.7 531,548 - -1.7 531,573 + -0.4 531,574 - -1.4 531,606 + +0.8 531,606 + +0.2 531,607 - -1.1 531,617 + -0.8 531,618 - -0.4 531,680 + +0.2 531,796 + BPHYT_RS02320 0.15 -0.2 531,797 - BPHYT_RS02320 0.15 +0.1 531,797 - BPHYT_RS02320 0.15 +0.1 531,807 + BPHYT_RS02320 0.16 -0.7 531,807 + BPHYT_RS02320 0.16 +0.1 531,808 - BPHYT_RS02320 0.16 +0.3 531,808 - BPHYT_RS02320 0.16 -0.0 531,808 - BPHYT_RS02320 0.16 -0.4 531,879 + BPHYT_RS02320 0.25 +0.6 531,880 - BPHYT_RS02320 0.25 +0.4 531,886 + BPHYT_RS02320 0.26 +0.1 531,886 + BPHYT_RS02320 0.26 +0.6 531,886 + BPHYT_RS02320 0.26 +0.0 531,923 + BPHYT_RS02320 0.31 +0.6 531,924 - BPHYT_RS02320 0.31 -0.4 531,949 + BPHYT_RS02320 0.34 +0.1 531,949 + BPHYT_RS02320 0.34 -0.0 532,206 + BPHYT_RS02320 0.67 +0.2 532,207 - BPHYT_RS02320 0.67 -1.1 532,314 - BPHYT_RS02320 0.80 +0.9 532,329 - BPHYT_RS02320 0.82 -1.1 532,433 + +1.3 532,434 - -0.1 532,434 - -0.2 532,549 + -1.8 532,549 + -0.6 532,549 + -0.8 532,550 - -1.1 532,550 - -0.1 532,550 - +0.5 532,551 + -0.3 532,552 - -0.0
Or see this region's nucleotide sequence