Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01595

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01585 and BPHYT_RS01590 are separated by 14 nucleotidesBPHYT_RS01590 and BPHYT_RS01595 overlap by 4 nucleotidesBPHYT_RS01595 and BPHYT_RS01600 are separated by 323 nucleotides BPHYT_RS01585: BPHYT_RS01585 - major facilitator superfamily protein, at 359,625 to 361,019 _RS01585 BPHYT_RS01590: BPHYT_RS01590 - methionine biosynthesis protein MetW, at 361,034 to 361,642 _RS01590 BPHYT_RS01595: BPHYT_RS01595 - homoserine O-acetyltransferase, at 361,639 to 362,784 _RS01595 BPHYT_RS01600: BPHYT_RS01600 - dihydroorotate oxidase, at 363,108 to 363,791 _RS01600 BPHYT_RS01605: BPHYT_RS01605 - HAD family hydrolase, at 363,758 to 364,561 _RS01605 Position (kb) 361 362 363Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 360.711 kb on + strand, within BPHYT_RS01585at 360.712 kb on - strand, within BPHYT_RS01585at 360.712 kb on - strand, within BPHYT_RS01585at 360.803 kb on - strand, within BPHYT_RS01585at 360.987 kb on - strandat 361.023 kb on + strandat 361.024 kb on - strandat 361.024 kb on - strandat 361.066 kb on + strandat 361.067 kb on - strandat 361.067 kb on - strandat 361.067 kb on - strandat 361.067 kb on - strandat 361.185 kb on - strand, within BPHYT_RS01590at 361.185 kb on - strand, within BPHYT_RS01590at 361.209 kb on + strand, within BPHYT_RS01590at 361.209 kb on + strand, within BPHYT_RS01590at 361.210 kb on - strand, within BPHYT_RS01590at 361.621 kb on - strandat 361.663 kb on - strandat 361.663 kb on - strandat 361.663 kb on - strandat 361.674 kb on - strandat 361.694 kb on + strandat 361.751 kb on + strandat 361.752 kb on - strandat 361.752 kb on - strandat 361.757 kb on - strand, within BPHYT_RS01595at 361.847 kb on + strand, within BPHYT_RS01595at 361.847 kb on + strand, within BPHYT_RS01595at 361.940 kb on + strand, within BPHYT_RS01595at 361.941 kb on - strand, within BPHYT_RS01595at 361.941 kb on - strand, within BPHYT_RS01595at 361.958 kb on + strand, within BPHYT_RS01595at 361.982 kb on + strand, within BPHYT_RS01595at 361.991 kb on + strand, within BPHYT_RS01595at 361.992 kb on - strand, within BPHYT_RS01595at 361.992 kb on - strand, within BPHYT_RS01595at 362.030 kb on + strand, within BPHYT_RS01595at 362.030 kb on + strand, within BPHYT_RS01595at 362.102 kb on + strand, within BPHYT_RS01595at 362.102 kb on + strand, within BPHYT_RS01595at 362.102 kb on + strand, within BPHYT_RS01595at 362.102 kb on + strand, within BPHYT_RS01595at 362.103 kb on - strand, within BPHYT_RS01595at 362.165 kb on + strand, within BPHYT_RS01595at 362.166 kb on - strand, within BPHYT_RS01595at 362.166 kb on - strand, within BPHYT_RS01595at 362.168 kb on + strand, within BPHYT_RS01595at 362.169 kb on - strand, within BPHYT_RS01595at 362.598 kb on - strand, within BPHYT_RS01595at 362.656 kb on - strand, within BPHYT_RS01595at 362.656 kb on - strand, within BPHYT_RS01595at 362.678 kb on + strandat 362.799 kb on - strandat 362.882 kb on + strandat 362.883 kb on - strandat 362.884 kb on + strandat 362.884 kb on + strandat 362.884 kb on + strandat 362.885 kb on - strandat 362.950 kb on + strandat 363.043 kb on - strandat 363.043 kb on - strandat 363.109 kb on + strandat 363.178 kb on + strand, within BPHYT_RS01600at 363.178 kb on + strand, within BPHYT_RS01600at 363.179 kb on - strand, within BPHYT_RS01600at 363.179 kb on - strand, within BPHYT_RS01600at 363.200 kb on + strand, within BPHYT_RS01600at 363.200 kb on + strand, within BPHYT_RS01600at 363.200 kb on + strand, within BPHYT_RS01600at 363.201 kb on - strand, within BPHYT_RS01600at 363.201 kb on - strand, within BPHYT_RS01600at 363.202 kb on + strand, within BPHYT_RS01600at 363.202 kb on + strand, within BPHYT_RS01600at 363.203 kb on - strand, within BPHYT_RS01600at 363.759 kb on + strandat 363.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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360,711 + BPHYT_RS01585 0.78 +0.3
360,712 - BPHYT_RS01585 0.78 +0.6
360,712 - BPHYT_RS01585 0.78 +0.0
360,803 - BPHYT_RS01585 0.84 +1.2
360,987 - -0.0
361,023 + +0.7
361,024 - -0.0
361,024 - +0.3
361,066 + -0.8
361,067 - -0.3
361,067 - -1.2
361,067 - -1.3
361,067 - -0.6
361,185 - BPHYT_RS01590 0.25 -1.0
361,185 - BPHYT_RS01590 0.25 -1.4
361,209 + BPHYT_RS01590 0.29 -1.8
361,209 + BPHYT_RS01590 0.29 -1.3
361,210 - BPHYT_RS01590 0.29 -1.7
361,621 - -0.8
361,663 - -4.2
361,663 - -1.0
361,663 - -3.8
361,674 - -4.1
361,694 + -2.6
361,751 + -4.0
361,752 - -5.4
361,752 - -3.5
361,757 - BPHYT_RS01595 0.10 -1.1
361,847 + BPHYT_RS01595 0.18 -4.8
361,847 + BPHYT_RS01595 0.18 -5.9
361,940 + BPHYT_RS01595 0.26 -4.3
361,941 - BPHYT_RS01595 0.26 -3.7
361,941 - BPHYT_RS01595 0.26 -2.5
361,958 + BPHYT_RS01595 0.28 -2.8
361,982 + BPHYT_RS01595 0.30 -3.8
361,991 + BPHYT_RS01595 0.31 -3.9
361,992 - BPHYT_RS01595 0.31 -2.7
361,992 - BPHYT_RS01595 0.31 -2.9
362,030 + BPHYT_RS01595 0.34 -3.9
362,030 + BPHYT_RS01595 0.34 -3.9
362,102 + BPHYT_RS01595 0.40 -6.3
362,102 + BPHYT_RS01595 0.40 -2.4
362,102 + BPHYT_RS01595 0.40 -3.2
362,102 + BPHYT_RS01595 0.40 -4.9
362,103 - BPHYT_RS01595 0.40 -2.7
362,165 + BPHYT_RS01595 0.46 -3.0
362,166 - BPHYT_RS01595 0.46 -0.9
362,166 - BPHYT_RS01595 0.46 -2.1
362,168 + BPHYT_RS01595 0.46 -4.8
362,169 - BPHYT_RS01595 0.46 -3.7
362,598 - BPHYT_RS01595 0.84 -1.3
362,656 - BPHYT_RS01595 0.89 -3.0
362,656 - BPHYT_RS01595 0.89 +0.1
362,678 + -6.5
362,799 - -0.1
362,882 + -2.1
362,883 - -0.4
362,884 + -1.2
362,884 + +0.2
362,884 + -3.0
362,885 - +0.3
362,950 + -5.2
363,043 - -0.3
363,043 - -1.0
363,109 + +0.0
363,178 + BPHYT_RS01600 0.10 -0.1
363,178 + BPHYT_RS01600 0.10 +1.2
363,179 - BPHYT_RS01600 0.10 -0.2
363,179 - BPHYT_RS01600 0.10 +0.7
363,200 + BPHYT_RS01600 0.13 +0.1
363,200 + BPHYT_RS01600 0.13 -0.3
363,200 + BPHYT_RS01600 0.13 -2.6
363,201 - BPHYT_RS01600 0.14 -1.8
363,201 - BPHYT_RS01600 0.14 -0.2
363,202 + BPHYT_RS01600 0.14 +0.4
363,202 + BPHYT_RS01600 0.14 -2.8
363,203 - BPHYT_RS01600 0.14 -0.3
363,759 + -0.3
363,759 + -1.7

Or see this region's nucleotide sequence