Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01500 and BPHYT_RS01505 are separated by 62 nucleotides BPHYT_RS01505 and BPHYT_RS01510 are separated by 6 nucleotides BPHYT_RS01510 and BPHYT_RS01515 are separated by 213 nucleotides
BPHYT_RS01500: BPHYT_RS01500 - 7-cyano-7-deazaguanine synthase, at 342,450 to 343,184
_RS01500
BPHYT_RS01505: BPHYT_RS01505 - 7-cyano-7-deazaguanine reductase, at 343,247 to 343,879
_RS01505
BPHYT_RS01510: BPHYT_RS01510 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 343,886 to 344,332
_RS01510
BPHYT_RS01515: BPHYT_RS01515 - 2-dehydro-3-deoxyglucarate aldolase, at 344,546 to 345,328
_RS01515
Position (kb) 343
344 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 342.272 kb on + strand at 342.273 kb on - strand at 342.273 kb on - strand at 342.298 kb on + strand at 342.304 kb on + strand at 342.304 kb on + strand at 342.305 kb on - strand at 342.306 kb on + strand at 342.306 kb on + strand at 342.306 kb on + strand at 342.307 kb on - strand at 342.307 kb on - strand at 342.307 kb on - strand at 342.307 kb on - strand at 342.307 kb on - strand at 342.343 kb on + strand at 342.343 kb on + strand at 342.344 kb on - strand at 342.345 kb on + strand at 342.346 kb on - strand at 342.346 kb on - strand at 342.346 kb on - strand at 342.473 kb on + strand at 342.540 kb on + strand, within BPHYT_RS01500 at 342.559 kb on + strand, within BPHYT_RS01500 at 342.559 kb on + strand, within BPHYT_RS01500 at 342.559 kb on + strand, within BPHYT_RS01500 at 342.559 kb on + strand, within BPHYT_RS01500 at 342.560 kb on - strand, within BPHYT_RS01500 at 342.560 kb on - strand, within BPHYT_RS01500 at 342.570 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.672 kb on - strand, within BPHYT_RS01500 at 342.672 kb on - strand, within BPHYT_RS01500 at 342.672 kb on - strand, within BPHYT_RS01500 at 342.935 kb on + strand, within BPHYT_RS01500 at 342.935 kb on + strand, within BPHYT_RS01500 at 342.936 kb on - strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.056 kb on + strand, within BPHYT_RS01500 at 343.056 kb on + strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.146 kb on + strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.147 kb on - strand at 343.253 kb on + strand at 343.275 kb on - strand at 343.436 kb on + strand, within BPHYT_RS01505 at 343.437 kb on - strand, within BPHYT_RS01505 at 343.731 kb on - strand, within BPHYT_RS01505 at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.863 kb on - strand at 343.957 kb on + strand, within BPHYT_RS01510 at 343.958 kb on - strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 344.117 kb on + strand, within BPHYT_RS01510 at 344.117 kb on + strand, within BPHYT_RS01510 at 344.118 kb on - strand, within BPHYT_RS01510 at 344.118 kb on - strand, within BPHYT_RS01510 at 344.128 kb on + strand, within BPHYT_RS01510 at 344.129 kb on - strand, within BPHYT_RS01510 at 344.129 kb on - strand, within BPHYT_RS01510 at 344.330 kb on + strand at 344.330 kb on + strand at 344.331 kb on - strand at 344.339 kb on + strand at 344.371 kb on + strand at 344.382 kb on + strand at 344.767 kb on - strand, within BPHYT_RS01515 at 344.767 kb on - strand, within BPHYT_RS01515 at 344.767 kb on - strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 342,272 + -0.1 342,273 - -0.1 342,273 - -1.1 342,298 + -0.2 342,304 + -0.1 342,304 + -0.3 342,305 - +0.5 342,306 + +1.2 342,306 + +0.5 342,306 + -0.1 342,307 - -1.1 342,307 - -0.2 342,307 - +0.0 342,307 - -0.4 342,307 - +0.8 342,343 + +0.5 342,343 + +0.2 342,344 - -0.7 342,345 + +0.1 342,346 - -4.8 342,346 - +1.7 342,346 - -0.2 342,473 + +0.6 342,540 + BPHYT_RS01500 0.12 +0.4 342,559 + BPHYT_RS01500 0.15 -0.3 342,559 + BPHYT_RS01500 0.15 -0.4 342,559 + BPHYT_RS01500 0.15 -0.2 342,559 + BPHYT_RS01500 0.15 -0.1 342,560 - BPHYT_RS01500 0.15 -0.6 342,560 - BPHYT_RS01500 0.15 -0.9 342,570 + BPHYT_RS01500 0.16 -0.3 342,671 + BPHYT_RS01500 0.30 -0.8 342,671 + BPHYT_RS01500 0.30 -1.5 342,671 + BPHYT_RS01500 0.30 +0.3 342,671 + BPHYT_RS01500 0.30 -0.5 342,671 + BPHYT_RS01500 0.30 -0.6 342,671 + BPHYT_RS01500 0.30 +0.8 342,672 - BPHYT_RS01500 0.30 +0.1 342,672 - BPHYT_RS01500 0.30 -1.2 342,672 - BPHYT_RS01500 0.30 +0.2 342,935 + BPHYT_RS01500 0.66 -0.1 342,935 + BPHYT_RS01500 0.66 +0.5 342,936 - BPHYT_RS01500 0.66 -0.7 343,049 + BPHYT_RS01500 0.81 +0.1 343,049 + BPHYT_RS01500 0.81 -0.3 343,049 + BPHYT_RS01500 0.81 +0.0 343,049 + BPHYT_RS01500 0.81 -0.8 343,049 + BPHYT_RS01500 0.81 -0.4 343,049 + BPHYT_RS01500 0.81 -0.8 343,049 + BPHYT_RS01500 0.81 -0.4 343,050 - BPHYT_RS01500 0.82 -0.9 343,050 - BPHYT_RS01500 0.82 -1.1 343,050 - BPHYT_RS01500 0.82 +1.0 343,050 - BPHYT_RS01500 0.82 +0.2 343,050 - BPHYT_RS01500 0.82 -0.1 343,050 - BPHYT_RS01500 0.82 -0.4 343,050 - BPHYT_RS01500 0.82 +0.7 343,056 + BPHYT_RS01500 0.82 +0.1 343,056 + BPHYT_RS01500 0.82 +0.2 343,057 - BPHYT_RS01500 0.83 -0.5 343,057 - BPHYT_RS01500 0.83 -0.9 343,057 - BPHYT_RS01500 0.83 -0.9 343,057 - BPHYT_RS01500 0.83 -0.1 343,057 - BPHYT_RS01500 0.83 -0.5 343,057 - BPHYT_RS01500 0.83 +0.4 343,146 + +0.2 343,146 + -0.3 343,146 + -2.7 343,146 + -1.3 343,146 + -0.8 343,146 + -0.6 343,147 - -1.1 343,253 + -0.3 343,275 - +1.2 343,436 + BPHYT_RS01505 0.30 -0.9 343,437 - BPHYT_RS01505 0.30 -2.2 343,731 - BPHYT_RS01505 0.76 -1.2 343,862 + -0.6 343,862 + -0.3 343,862 + -0.3 343,862 + +0.0 343,862 + +0.2 343,863 - -0.6 343,957 + BPHYT_RS01510 0.16 +0.8 343,958 - BPHYT_RS01510 0.16 +1.5 343,976 + BPHYT_RS01510 0.20 -0.1 343,976 + BPHYT_RS01510 0.20 -0.4 343,976 + BPHYT_RS01510 0.20 -0.1 343,976 + BPHYT_RS01510 0.20 -1.1 343,977 - BPHYT_RS01510 0.20 -1.6 343,977 - BPHYT_RS01510 0.20 +1.2 343,977 - BPHYT_RS01510 0.20 -0.1 343,977 - BPHYT_RS01510 0.20 +0.4 343,977 - BPHYT_RS01510 0.20 +0.5 344,117 + BPHYT_RS01510 0.52 +1.2 344,117 + BPHYT_RS01510 0.52 +0.1 344,118 - BPHYT_RS01510 0.52 -0.5 344,118 - BPHYT_RS01510 0.52 +0.9 344,128 + BPHYT_RS01510 0.54 -1.0 344,129 - BPHYT_RS01510 0.54 -0.4 344,129 - BPHYT_RS01510 0.54 -0.1 344,330 + -2.2 344,330 + +0.2 344,331 - -0.8 344,339 + +0.2 344,371 + +0.3 344,382 + -0.4 344,767 - BPHYT_RS01515 0.28 -1.5 344,767 - BPHYT_RS01515 0.28 +0.4 344,767 - BPHYT_RS01515 0.28 -0.3 344,808 + BPHYT_RS01515 0.33 -0.0 344,808 + BPHYT_RS01515 0.33 -0.5 344,808 + BPHYT_RS01515 0.33 +1.6
Or see this region's nucleotide sequence