Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01475 and BPHYT_RS01480 overlap by 4 nucleotides BPHYT_RS01480 and BPHYT_RS01485 overlap by 11 nucleotides BPHYT_RS01485 and BPHYT_RS01490 are separated by 0 nucleotides BPHYT_RS01490 and BPHYT_RS01495 are separated by 107 nucleotides
BPHYT_RS01475: BPHYT_RS01475 - 16S rRNA methyltransferase, at 336,748 to 338,187
_RS01475
BPHYT_RS01480: BPHYT_RS01480 - hypothetical protein, at 338,184 to 338,783
_RS01480
BPHYT_RS01485: BPHYT_RS01485 - histidine kinase, at 338,773 to 341,187
_RS01485
BPHYT_RS01490: BPHYT_RS01490 - XRE family transcriptional regulator, at 341,188 to 341,877
_RS01490
BPHYT_RS01495: BPHYT_RS01495 - tRNA-Phe, at 341,985 to 342,060
_RS01495
Position (kb) 338
339
340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 337.957 kb on + strand, within BPHYT_RS01475 at 337.957 kb on + strand, within BPHYT_RS01475 at 337.958 kb on - strand, within BPHYT_RS01475 at 337.962 kb on + strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 338.020 kb on + strand, within BPHYT_RS01475 at 338.021 kb on - strand, within BPHYT_RS01475 at 338.021 kb on - strand, within BPHYT_RS01475 at 338.034 kb on - strand, within BPHYT_RS01475 at 338.034 kb on - strand, within BPHYT_RS01475 at 338.034 kb on - strand, within BPHYT_RS01475 at 338.164 kb on + strand at 338.164 kb on + strand at 338.777 kb on + strand at 338.777 kb on + strand at 338.778 kb on - strand at 338.781 kb on + strand at 339.704 kb on - strand, within BPHYT_RS01485 at 342.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 337,957 + BPHYT_RS01475 0.84 -2.0 337,957 + BPHYT_RS01475 0.84 -0.4 337,958 - BPHYT_RS01475 0.84 +2.6 337,962 + BPHYT_RS01475 0.84 -0.7 337,963 - BPHYT_RS01475 0.84 -0.4 337,963 - BPHYT_RS01475 0.84 +0.9 337,963 - BPHYT_RS01475 0.84 -0.8 337,963 - BPHYT_RS01475 0.84 -0.1 337,963 - BPHYT_RS01475 0.84 +0.4 338,020 + BPHYT_RS01475 0.88 -0.6 338,021 - BPHYT_RS01475 0.88 +0.5 338,021 - BPHYT_RS01475 0.88 -0.8 338,034 - BPHYT_RS01475 0.89 -0.4 338,034 - BPHYT_RS01475 0.89 -0.6 338,034 - BPHYT_RS01475 0.89 -0.5 338,164 + -0.8 338,164 + -0.3 338,777 + +0.6 338,777 + -2.2 338,778 - -0.0 338,781 + -0.6 339,704 - BPHYT_RS01485 0.39 -1.5 342,116 - -0.2
Or see this region's nucleotide sequence