Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00285 and BPHYT_RS00290 overlap by 16 nucleotides BPHYT_RS00290 and BPHYT_RS00295 are separated by 8 nucleotides BPHYT_RS00295 and BPHYT_RS00300 are separated by 118 nucleotides BPHYT_RS00300 and BPHYT_RS00305 are separated by 20 nucleotides
BPHYT_RS00285: BPHYT_RS00285 - urease accessory protein UreG, at 72,638 to 73,252
_RS00285
BPHYT_RS00290: BPHYT_RS00290 - hypothetical protein, at 73,237 to 74,064
_RS00290
BPHYT_RS00295: BPHYT_RS00295 - hypothetical protein, at 74,073 to 74,495
_RS00295
BPHYT_RS00300: BPHYT_RS00300 - urease accessory protein UreF, at 74,614 to 75,306
_RS00300
BPHYT_RS00305: BPHYT_RS00305 - ABC transporter substrate-binding protein, at 75,327 to 76,892
_RS00305
Position (kb) 74
75 Strain fitness (log2 ratio) -2
-1
0
1 at 73.097 kb on + strand, within BPHYT_RS00285 at 73.097 kb on + strand, within BPHYT_RS00285 at 73.097 kb on + strand, within BPHYT_RS00285 at 73.098 kb on - strand, within BPHYT_RS00285 at 73.098 kb on - strand, within BPHYT_RS00285 at 73.135 kb on - strand, within BPHYT_RS00285 at 73.240 kb on + strand at 73.241 kb on - strand at 73.384 kb on + strand, within BPHYT_RS00290 at 73.385 kb on - strand, within BPHYT_RS00290 at 73.463 kb on + strand, within BPHYT_RS00290 at 73.464 kb on - strand, within BPHYT_RS00290 at 73.697 kb on - strand, within BPHYT_RS00290 at 73.819 kb on + strand, within BPHYT_RS00290 at 73.820 kb on - strand, within BPHYT_RS00290 at 73.820 kb on - strand, within BPHYT_RS00290 at 74.063 kb on - strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.093 kb on - strand at 74.259 kb on + strand, within BPHYT_RS00295 at 74.259 kb on + strand, within BPHYT_RS00295 at 74.260 kb on - strand, within BPHYT_RS00295 at 74.260 kb on - strand, within BPHYT_RS00295 at 74.664 kb on - strand at 74.963 kb on + strand, within BPHYT_RS00300 at 74.974 kb on + strand, within BPHYT_RS00300 at 74.975 kb on - strand, within BPHYT_RS00300 at 75.344 kb on - strand at 75.421 kb on + strand at 75.422 kb on - strand at 75.422 kb on - strand at 75.422 kb on - strand at 75.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 73,097 + BPHYT_RS00285 0.75 +0.9 73,097 + BPHYT_RS00285 0.75 +1.0 73,097 + BPHYT_RS00285 0.75 +0.1 73,098 - BPHYT_RS00285 0.75 -2.4 73,098 - BPHYT_RS00285 0.75 +0.2 73,135 - BPHYT_RS00285 0.81 -0.4 73,240 + -0.7 73,241 - +0.5 73,384 + BPHYT_RS00290 0.18 +0.0 73,385 - BPHYT_RS00290 0.18 -1.0 73,463 + BPHYT_RS00290 0.27 -1.5 73,464 - BPHYT_RS00290 0.27 +0.7 73,697 - BPHYT_RS00290 0.56 -0.3 73,819 + BPHYT_RS00290 0.70 -0.6 73,820 - BPHYT_RS00290 0.70 +0.4 73,820 - BPHYT_RS00290 0.70 +0.7 74,063 - -0.7 74,072 + -0.2 74,072 + -0.1 74,072 + +0.7 74,072 + -0.1 74,072 + -1.6 74,073 - +0.4 74,073 - -0.5 74,073 - -1.2 74,073 - -0.5 74,093 - +0.1 74,259 + BPHYT_RS00295 0.44 -1.6 74,259 + BPHYT_RS00295 0.44 -0.6 74,260 - BPHYT_RS00295 0.44 -1.3 74,260 - BPHYT_RS00295 0.44 -0.1 74,664 - +0.5 74,963 + BPHYT_RS00300 0.50 -0.4 74,974 + BPHYT_RS00300 0.52 +0.5 74,975 - BPHYT_RS00300 0.52 -0.4 75,344 - -0.2 75,421 + +0.4 75,422 - +0.2 75,422 - -0.3 75,422 - -0.6 75,425 - -0.5
Or see this region's nucleotide sequence