Strain Fitness in Sinorhizobium meliloti 1021 around SMc02857

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02856 and SMc02857 are separated by 216 nucleotidesSMc02857 and SMc02858 are separated by 274 nucleotides SMc02856: SMc02856 - penicillin-binding protein, at 207,244 to 209,547 SMc02856 SMc02857: SMc02857 - molecular chaperone DnaK, at 209,764 to 211,689 SMc02857 SMc02858: SMc02858 - chaperone protein DnaJ, at 211,964 to 213,103 SMc02858 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 208.793 kb on + strand, within SMc02856at 208.793 kb on + strand, within SMc02856at 208.871 kb on - strand, within SMc02856at 208.963 kb on + strand, within SMc02856at 208.963 kb on + strand, within SMc02856at 208.964 kb on - strand, within SMc02856at 209.016 kb on + strand, within SMc02856at 209.017 kb on - strand, within SMc02856at 209.017 kb on - strand, within SMc02856at 209.132 kb on - strand, within SMc02856at 209.647 kb on + strandat 209.647 kb on + strandat 209.647 kb on + strandat 209.647 kb on + strandat 209.647 kb on + strandat 209.649 kb on + strandat 209.649 kb on + strandat 209.651 kb on + strandat 211.561 kb on + strandat 211.561 kb on + strandat 211.562 kb on - strandat 211.878 kb on + strandat 211.895 kb on + strandat 211.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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208,793 + SMc02856 0.67 -3.0
208,793 + SMc02856 0.67 -0.9
208,871 - SMc02856 0.71 -2.6
208,963 + SMc02856 0.75 -0.1
208,963 + SMc02856 0.75 -5.7
208,964 - SMc02856 0.75 -2.9
209,016 + SMc02856 0.77 -1.7
209,017 - SMc02856 0.77 +0.4
209,017 - SMc02856 0.77 -1.8
209,132 - SMc02856 0.82 -2.3
209,647 + -0.6
209,647 + +0.9
209,647 + -0.1
209,647 + -0.1
209,647 + -0.7
209,649 + -0.0
209,649 + +1.6
209,651 + -0.3
211,561 + -0.4
211,561 + -0.2
211,562 - -0.3
211,878 + -0.1
211,895 + -0.2
211,944 - -0.1

Or see this region's nucleotide sequence