Strain Fitness in Sinorhizobium meliloti 1021 around SMc02325

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02324 and SMc02325 are separated by 189 nucleotidesSMc02325 and SMc03000 overlap by 4 nucleotidesSMc03000 and SMc03001 overlap by 1 nucleotides SMc02324: SMc02324 - periplasmic binding ABC transporter protein, at 695,084 to 696,073 SMc02324 SMc02325: SMc02325 - ABC transporter ATP-binding protein, at 696,263 to 697,774 SMc02325 SMc03000: SMc03000 - ABC transporter permease, at 697,771 to 698,751 SMc03000 SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755 SMc03001 Position (kb) 696 697 698Strain fitness (log2 ratio) -1 0 1 2 3at 695.267 kb on + strand, within SMc02324at 695.267 kb on + strand, within SMc02324at 695.268 kb on - strand, within SMc02324at 695.268 kb on - strand, within SMc02324at 695.604 kb on - strand, within SMc02324at 695.621 kb on + strand, within SMc02324at 695.622 kb on - strand, within SMc02324at 695.622 kb on - strand, within SMc02324at 695.898 kb on - strand, within SMc02324at 695.918 kb on + strand, within SMc02324at 695.918 kb on + strand, within SMc02324at 695.918 kb on + strand, within SMc02324at 696.033 kb on - strandat 696.033 kb on - strandat 696.033 kb on - strandat 696.141 kb on + strandat 696.142 kb on - strandat 696.142 kb on - strandat 696.291 kb on + strandat 696.292 kb on - strandat 696.345 kb on - strandat 696.408 kb on + strandat 696.409 kb on - strandat 696.409 kb on - strandat 696.422 kb on + strand, within SMc02325at 696.422 kb on + strand, within SMc02325at 696.423 kb on - strand, within SMc02325at 696.804 kb on - strand, within SMc02325at 696.804 kb on - strand, within SMc02325at 696.894 kb on - strand, within SMc02325at 696.896 kb on - strand, within SMc02325at 697.115 kb on + strand, within SMc02325at 697.115 kb on + strand, within SMc02325at 697.116 kb on - strand, within SMc02325at 697.116 kb on - strand, within SMc02325at 697.256 kb on + strand, within SMc02325at 697.256 kb on + strand, within SMc02325at 697.256 kb on + strand, within SMc02325at 697.257 kb on - strand, within SMc02325at 697.257 kb on - strand, within SMc02325at 697.257 kb on - strand, within SMc02325at 697.257 kb on - strand, within SMc02325at 697.692 kb on - strandat 697.893 kb on + strand, within SMc03000at 697.893 kb on + strand, within SMc03000at 698.118 kb on + strand, within SMc03000at 698.118 kb on + strand, within SMc03000at 698.118 kb on + strand, within SMc03000at 698.158 kb on + strand, within SMc03000at 698.158 kb on + strand, within SMc03000at 698.158 kb on + strand, within SMc03000at 698.413 kb on + strand, within SMc03000at 698.414 kb on - strand, within SMc03000at 698.449 kb on + strand, within SMc03000at 698.449 kb on + strand, within SMc03000at 698.631 kb on + strand, within SMc03000at 698.631 kb on + strand, within SMc03000at 698.632 kb on - strand, within SMc03000at 698.632 kb on - strand, within SMc03000

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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695,267 + SMc02324 0.18 -0.2
695,267 + SMc02324 0.18 +0.1
695,268 - SMc02324 0.19 -0.3
695,268 - SMc02324 0.19 +0.4
695,604 - SMc02324 0.53 +1.0
695,621 + SMc02324 0.54 +0.4
695,622 - SMc02324 0.54 -0.3
695,622 - SMc02324 0.54 -0.8
695,898 - SMc02324 0.82 -0.2
695,918 + SMc02324 0.84 +0.7
695,918 + SMc02324 0.84 -1.7
695,918 + SMc02324 0.84 -0.3
696,033 - -0.0
696,033 - +0.8
696,033 - -0.5
696,141 + +1.9
696,142 - -1.5
696,142 - -0.7
696,291 + +1.1
696,292 - -1.3
696,345 - +0.5
696,408 + -0.9
696,409 - -0.0
696,409 - -0.0
696,422 + SMc02325 0.11 -1.4
696,422 + SMc02325 0.11 -1.4
696,423 - SMc02325 0.11 -0.8
696,804 - SMc02325 0.36 -1.7
696,804 - SMc02325 0.36 +0.1
696,894 - SMc02325 0.42 +0.1
696,896 - SMc02325 0.42 -0.4
697,115 + SMc02325 0.56 +3.4
697,115 + SMc02325 0.56 +3.1
697,116 - SMc02325 0.56 -1.3
697,116 - SMc02325 0.56 +0.6
697,256 + SMc02325 0.66 -0.3
697,256 + SMc02325 0.66 -0.7
697,256 + SMc02325 0.66 -1.2
697,257 - SMc02325 0.66 +0.2
697,257 - SMc02325 0.66 -1.3
697,257 - SMc02325 0.66 -0.1
697,257 - SMc02325 0.66 -0.9
697,692 - +0.3
697,893 + SMc03000 0.12 +0.3
697,893 + SMc03000 0.12 -0.5
698,118 + SMc03000 0.35 +0.5
698,118 + SMc03000 0.35 +0.5
698,118 + SMc03000 0.35 -0.2
698,158 + SMc03000 0.39 -1.0
698,158 + SMc03000 0.39 -1.7
698,158 + SMc03000 0.39 -1.0
698,413 + SMc03000 0.65 +3.7
698,414 - SMc03000 0.66 -0.1
698,449 + SMc03000 0.69 +1.9
698,449 + SMc03000 0.69 +1.3
698,631 + SMc03000 0.88 +1.0
698,631 + SMc03000 0.88 +0.6
698,632 - SMc03000 0.88 -0.6
698,632 - SMc03000 0.88 -0.3

Or see this region's nucleotide sequence