Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02324 and SMc02325 are separated by 189 nucleotides SMc02325 and SMc03000 overlap by 4 nucleotides SMc03000 and SMc03001 overlap by 1 nucleotides
SMc02324: SMc02324 - periplasmic binding ABC transporter protein, at 695,084 to 696,073
SMc02324
SMc02325: SMc02325 - ABC transporter ATP-binding protein, at 696,263 to 697,774
SMc02325
SMc03000: SMc03000 - ABC transporter permease, at 697,771 to 698,751
SMc03000
SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755
SMc03001
Position (kb) 696
697
698 Strain fitness (log2 ratio) -1
0
1
2
3 at 695.267 kb on + strand, within SMc02324 at 695.267 kb on + strand, within SMc02324 at 695.268 kb on - strand, within SMc02324 at 695.268 kb on - strand, within SMc02324 at 695.604 kb on - strand, within SMc02324 at 695.621 kb on + strand, within SMc02324 at 695.622 kb on - strand, within SMc02324 at 695.622 kb on - strand, within SMc02324 at 695.898 kb on - strand, within SMc02324 at 695.918 kb on + strand, within SMc02324 at 695.918 kb on + strand, within SMc02324 at 695.918 kb on + strand, within SMc02324 at 696.033 kb on - strand at 696.033 kb on - strand at 696.033 kb on - strand at 696.141 kb on + strand at 696.142 kb on - strand at 696.142 kb on - strand at 696.291 kb on + strand at 696.292 kb on - strand at 696.345 kb on - strand at 696.408 kb on + strand at 696.409 kb on - strand at 696.409 kb on - strand at 696.422 kb on + strand, within SMc02325 at 696.422 kb on + strand, within SMc02325 at 696.423 kb on - strand, within SMc02325 at 696.804 kb on - strand, within SMc02325 at 696.804 kb on - strand, within SMc02325 at 696.894 kb on - strand, within SMc02325 at 696.896 kb on - strand, within SMc02325 at 697.115 kb on + strand, within SMc02325 at 697.115 kb on + strand, within SMc02325 at 697.116 kb on - strand, within SMc02325 at 697.116 kb on - strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.692 kb on - strand at 697.893 kb on + strand, within SMc03000 at 697.893 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.413 kb on + strand, within SMc03000 at 698.414 kb on - strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.632 kb on - strand, within SMc03000
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 695,267 + SMc02324 0.18 -0.2 695,267 + SMc02324 0.18 +0.1 695,268 - SMc02324 0.19 -0.3 695,268 - SMc02324 0.19 +0.4 695,604 - SMc02324 0.53 +1.0 695,621 + SMc02324 0.54 +0.4 695,622 - SMc02324 0.54 -0.3 695,622 - SMc02324 0.54 -0.8 695,898 - SMc02324 0.82 -0.2 695,918 + SMc02324 0.84 +0.7 695,918 + SMc02324 0.84 -1.7 695,918 + SMc02324 0.84 -0.3 696,033 - -0.0 696,033 - +0.8 696,033 - -0.5 696,141 + +1.9 696,142 - -1.5 696,142 - -0.7 696,291 + +1.1 696,292 - -1.3 696,345 - +0.5 696,408 + -0.9 696,409 - -0.0 696,409 - -0.0 696,422 + SMc02325 0.11 -1.4 696,422 + SMc02325 0.11 -1.4 696,423 - SMc02325 0.11 -0.8 696,804 - SMc02325 0.36 -1.7 696,804 - SMc02325 0.36 +0.1 696,894 - SMc02325 0.42 +0.1 696,896 - SMc02325 0.42 -0.4 697,115 + SMc02325 0.56 +3.4 697,115 + SMc02325 0.56 +3.1 697,116 - SMc02325 0.56 -1.3 697,116 - SMc02325 0.56 +0.6 697,256 + SMc02325 0.66 -0.3 697,256 + SMc02325 0.66 -0.7 697,256 + SMc02325 0.66 -1.2 697,257 - SMc02325 0.66 +0.2 697,257 - SMc02325 0.66 -1.3 697,257 - SMc02325 0.66 -0.1 697,257 - SMc02325 0.66 -0.9 697,692 - +0.3 697,893 + SMc03000 0.12 +0.3 697,893 + SMc03000 0.12 -0.5 698,118 + SMc03000 0.35 +0.5 698,118 + SMc03000 0.35 +0.5 698,118 + SMc03000 0.35 -0.2 698,158 + SMc03000 0.39 -1.0 698,158 + SMc03000 0.39 -1.7 698,158 + SMc03000 0.39 -1.0 698,413 + SMc03000 0.65 +3.7 698,414 - SMc03000 0.66 -0.1 698,449 + SMc03000 0.69 +1.9 698,449 + SMc03000 0.69 +1.3 698,631 + SMc03000 0.88 +1.0 698,631 + SMc03000 0.88 +0.6 698,632 - SMc03000 0.88 -0.6 698,632 - SMc03000 0.88 -0.3
Or see this region's nucleotide sequence