Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02241 and SMc02242 are separated by 15 nucleotides SMc02242 and SMc02243 are separated by 2 nucleotides SMc02243 and SMc02244 are separated by 46 nucleotides SMc02244 and SMc02245 overlap by 25 nucleotides
SMc02241: SMc02241 - hypothetical protein, at 605,288 to 606,226
SMc02241
SMc02242: SMc02242 - hypothetical protein, at 606,242 to 606,640
SMc02242
SMc02243: SMc02243 - hypothetical protein, at 606,643 to 607,146
SMc02243
SMc02244: SMc02244 - transmembrane protein, at 607,193 to 608,560
SMc02244
SMc02245: SMc02245 - dihydroorotate dehydrogenase 2, at 608,536 to 609,624
SMc02245
Position (kb) 607
608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 606.278 kb on + strand at 606.343 kb on - strand, within SMc02242 at 606.343 kb on - strand, within SMc02242 at 606.343 kb on - strand, within SMc02242 at 606.388 kb on - strand, within SMc02242 at 606.497 kb on + strand, within SMc02242 at 606.498 kb on - strand, within SMc02242 at 606.498 kb on - strand, within SMc02242 at 606.501 kb on - strand, within SMc02242 at 606.569 kb on + strand, within SMc02242 at 606.794 kb on - strand, within SMc02243 at 606.913 kb on - strand, within SMc02243 at 606.934 kb on + strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.027 kb on + strand, within SMc02243 at 607.120 kb on + strand at 607.120 kb on + strand at 607.166 kb on - strand at 607.181 kb on - strand at 607.267 kb on + strand at 607.268 kb on - strand at 607.268 kb on - strand at 607.466 kb on + strand, within SMc02244 at 607.467 kb on - strand, within SMc02244 at 607.467 kb on - strand, within SMc02244 at 607.552 kb on + strand, within SMc02244 at 607.552 kb on + strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.554 kb on + strand, within SMc02244 at 607.554 kb on + strand, within SMc02244 at 607.555 kb on - strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.629 kb on - strand, within SMc02244 at 607.673 kb on + strand, within SMc02244 at 607.674 kb on - strand, within SMc02244 at 607.865 kb on + strand, within SMc02244 at 607.954 kb on + strand, within SMc02244 at 607.955 kb on - strand, within SMc02244 at 608.079 kb on - strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.294 kb on - strand, within SMc02244 at 608.294 kb on - strand, within SMc02244 at 608.578 kb on + strand at 608.579 kb on - strand at 608.678 kb on + strand, within SMc02245 at 608.679 kb on - strand, within SMc02245 at 609.167 kb on + strand, within SMc02245 at 609.167 kb on + strand, within SMc02245 at 609.208 kb on - strand, within SMc02245 at 609.280 kb on - strand, within SMc02245
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 606,278 + -0.8 606,343 - SMc02242 0.25 +0.2 606,343 - SMc02242 0.25 -0.2 606,343 - SMc02242 0.25 -1.0 606,388 - SMc02242 0.37 -0.4 606,497 + SMc02242 0.64 -0.4 606,498 - SMc02242 0.64 -0.3 606,498 - SMc02242 0.64 +0.1 606,501 - SMc02242 0.65 -1.2 606,569 + SMc02242 0.82 -1.1 606,794 - SMc02243 0.30 -0.4 606,913 - SMc02243 0.54 -0.9 606,934 + SMc02243 0.58 -2.4 607,016 - SMc02243 0.74 -1.1 607,016 - SMc02243 0.74 +0.5 607,016 - SMc02243 0.74 -0.6 607,027 + SMc02243 0.76 -1.8 607,120 + +0.8 607,120 + +0.3 607,166 - +0.4 607,181 - -0.1 607,267 + -2.8 607,268 - -0.7 607,268 - -0.3 607,466 + SMc02244 0.20 +1.1 607,467 - SMc02244 0.20 +0.1 607,467 - SMc02244 0.20 +0.0 607,552 + SMc02244 0.26 -0.3 607,552 + SMc02244 0.26 +0.9 607,553 - SMc02244 0.26 -0.6 607,553 - SMc02244 0.26 -0.1 607,553 - SMc02244 0.26 +0.7 607,553 - SMc02244 0.26 -0.6 607,553 - SMc02244 0.26 +1.2 607,554 + SMc02244 0.26 +1.8 607,554 + SMc02244 0.26 -1.8 607,555 - SMc02244 0.26 -0.4 607,628 + SMc02244 0.32 +1.7 607,628 + SMc02244 0.32 -1.1 607,628 + SMc02244 0.32 -0.5 607,629 - SMc02244 0.32 -0.6 607,673 + SMc02244 0.35 -0.5 607,674 - SMc02244 0.35 +0.8 607,865 + SMc02244 0.49 +0.2 607,954 + SMc02244 0.56 -0.5 607,955 - SMc02244 0.56 +0.4 608,079 - SMc02244 0.65 +0.6 608,291 + SMc02244 0.80 -1.3 608,291 + SMc02244 0.80 +0.3 608,291 + SMc02244 0.80 -1.2 608,292 - SMc02244 0.80 +0.3 608,292 - SMc02244 0.80 +1.5 608,292 - SMc02244 0.80 +1.5 608,292 - SMc02244 0.80 -0.8 608,292 - SMc02244 0.80 +1.3 608,292 - SMc02244 0.80 -1.4 608,292 - SMc02244 0.80 -0.6 608,292 - SMc02244 0.80 +1.8 608,293 + SMc02244 0.80 -0.4 608,293 + SMc02244 0.80 +0.1 608,293 + SMc02244 0.80 +1.9 608,294 - SMc02244 0.80 -1.1 608,294 - SMc02244 0.80 +0.3 608,578 + -0.9 608,579 - +0.2 608,678 + SMc02245 0.13 -0.1 608,679 - SMc02245 0.13 +1.9 609,167 + SMc02245 0.58 +0.3 609,167 + SMc02245 0.58 -0.3 609,208 - SMc02245 0.62 +0.3 609,280 - SMc02245 0.68 -1.8
Or see this region's nucleotide sequence