Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01802 and SMc01803 are separated by 154 nucleotides SMc01803 and SMc01804 are separated by 2 nucleotides SMc01804 and SMc01805 are separated by 218 nucleotides SMc01805 and SMc01806 are separated by 168 nucleotides
SMc01802: SMc01802 - agmatinase, at 1,349,168 to 1,350,124
SMc01802
SMc01803: SMc01803 - 30S ribosomal protein S9, at 1,350,279 to 1,350,746
SMc01803
SMc01804: SMc01804 - 50S ribosomal protein L13, at 1,350,749 to 1,351,213
SMc01804
SMc01805: SMc01805 - hypothetical protein, at 1,351,432 to 1,351,863
SMc01805
SMc01806: SMc01806 - enoyl-CoA hydratase, at 1,352,032 to 1,352,853
SMc01806
Position (kb)
1350
1351
1352 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1349.749 kb on - strand, within SMc01802 at 1349.818 kb on - strand, within SMc01802 at 1350.021 kb on + strand, within SMc01802 at 1351.498 kb on + strand, within SMc01805 at 1351.551 kb on + strand, within SMc01805 at 1351.551 kb on + strand, within SMc01805 at 1351.551 kb on + strand, within SMc01805 at 1351.552 kb on - strand, within SMc01805 at 1351.633 kb on - strand, within SMc01805 at 1351.651 kb on - strand, within SMc01805 at 1351.653 kb on - strand, within SMc01805 at 1351.879 kb on + strand at 1351.879 kb on + strand at 1351.879 kb on + strand at 1351.879 kb on + strand at 1351.880 kb on - strand at 1351.901 kb on + strand at 1351.943 kb on + strand at 1351.943 kb on + strand at 1351.943 kb on + strand at 1351.944 kb on - strand at 1351.944 kb on - strand at 1351.944 kb on - strand at 1351.944 kb on - strand at 1352.113 kb on - strand at 1352.113 kb on - strand at 1352.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,349,749 - SMc01802 0.61 -0.5 1,349,818 - SMc01802 0.68 +1.5 1,350,021 + SMc01802 0.89 -1.2 1,351,498 + SMc01805 0.15 -3.0 1,351,551 + SMc01805 0.28 -0.3 1,351,551 + SMc01805 0.28 -2.2 1,351,551 + SMc01805 0.28 +0.5 1,351,552 - SMc01805 0.28 +0.3 1,351,633 - SMc01805 0.47 +5.0 1,351,651 - SMc01805 0.51 -1.1 1,351,653 - SMc01805 0.51 +1.6 1,351,879 + -0.4 1,351,879 + -0.2 1,351,879 + -2.5 1,351,879 + -0.6 1,351,880 - +2.7 1,351,901 + +0.7 1,351,943 + +0.3 1,351,943 + -0.3 1,351,943 + -3.6 1,351,944 - +0.4 1,351,944 - +0.4 1,351,944 - +0.1 1,351,944 - -0.6 1,352,113 - -0.9 1,352,113 - -0.1 1,352,113 - +0.2
Or see this region's nucleotide sequence