Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00430 and SMc00431 are separated by 4 nucleotides SMc00431 and SMc00432 are separated by 76 nucleotides
SMc00430: SMc00430 - oxidoreductase, at 378,451 to 379,434
SMc00430
SMc00431: SMc00431 - hypothetical protein, at 379,439 to 379,843
SMc00431
SMc00432: SMc00432 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) <small>(from data)</small>, at 379,920 to 380,720
SMc00432
Position (kb) 379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 378.459 kb on - strand at 378.862 kb on + strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 379.217 kb on - strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.390 kb on + strand at 379.391 kb on - strand at 379.407 kb on + strand at 379.542 kb on - strand, within SMc00431 at 379.665 kb on + strand, within SMc00431 at 379.666 kb on - strand, within SMc00431 at 379.875 kb on + strand at 379.876 kb on - strand at 379.876 kb on - strand at 380.002 kb on + strand, within SMc00432 at 380.003 kb on - strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.006 kb on - strand, within SMc00432 at 380.041 kb on + strand, within SMc00432 at 380.042 kb on - strand, within SMc00432 at 380.061 kb on + strand, within SMc00432 at 380.062 kb on - strand, within SMc00432 at 380.113 kb on + strand, within SMc00432 at 380.158 kb on + strand, within SMc00432 at 380.158 kb on + strand at 380.158 kb on + strand, within SMc00432 at 380.158 kb on + strand, within SMc00432 at 380.159 kb on - strand, within SMc00432 at 380.161 kb on + strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.176 kb on + strand, within SMc00432 at 380.176 kb on + strand, within SMc00432 at 380.311 kb on + strand, within SMc00432 at 380.312 kb on - strand, within SMc00432 at 380.312 kb on - strand, within SMc00432 at 380.464 kb on + strand, within SMc00432 at 380.464 kb on + strand, within SMc00432 at 380.465 kb on - strand, within SMc00432 at 380.642 kb on - strand at 380.642 kb on - strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.723 kb on - strand at 380.723 kb on - strand at 380.723 kb on - strand at 380.820 kb on + strand at 380.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 378,459 - -0.1 378,862 + SMc00430 0.42 +0.0 378,863 - SMc00430 0.42 -0.7 378,863 - SMc00430 0.42 -0.4 378,863 - SMc00430 0.42 -0.3 378,863 - SMc00430 0.42 -0.5 379,217 - SMc00430 0.78 -1.7 379,261 + SMc00430 0.82 +0.3 379,261 + SMc00430 0.82 +0.5 379,261 + SMc00430 0.82 -0.4 379,261 + SMc00430 0.82 -0.1 379,261 + SMc00430 0.82 +0.5 379,262 - SMc00430 0.82 -0.1 379,262 - SMc00430 0.82 +1.0 379,262 - SMc00430 0.82 -2.2 379,390 + -0.5 379,391 - -1.5 379,407 + +0.2 379,542 - SMc00431 0.25 +1.3 379,665 + SMc00431 0.56 +1.6 379,666 - SMc00431 0.56 +0.8 379,875 + -3.6 379,876 - -0.1 379,876 - -0.7 380,002 + SMc00432 0.10 +0.9 380,003 - SMc00432 0.10 -0.4 380,005 + SMc00432 0.11 +0.5 380,005 + SMc00432 0.11 +0.9 380,005 + SMc00432 0.11 +0.0 380,006 - SMc00432 0.11 +1.1 380,041 + SMc00432 0.15 +0.7 380,042 - SMc00432 0.15 -0.2 380,061 + SMc00432 0.18 -0.3 380,062 - SMc00432 0.18 +0.1 380,113 + SMc00432 0.24 -0.2 380,158 + SMc00432 0.30 -0.3 380,158 + +1.9 380,158 + SMc00432 0.30 -0.2 380,158 + SMc00432 0.30 -0.2 380,159 - SMc00432 0.30 -3.2 380,161 + SMc00432 0.30 -1.2 380,162 - SMc00432 0.30 +1.6 380,162 - SMc00432 0.30 +0.7 380,162 - SMc00432 0.30 -0.3 380,162 - SMc00432 0.30 -0.6 380,162 - SMc00432 0.30 -0.4 380,176 + SMc00432 0.32 +0.4 380,176 + SMc00432 0.32 +0.1 380,311 + SMc00432 0.49 +0.5 380,312 - SMc00432 0.49 +1.1 380,312 - SMc00432 0.49 -0.5 380,464 + SMc00432 0.68 -1.0 380,464 + SMc00432 0.68 +0.2 380,465 - SMc00432 0.68 -0.4 380,642 - -0.0 380,642 - -2.2 380,722 + +0.7 380,722 + -0.5 380,722 + -0.8 380,722 + -0.7 380,722 + +0.7 380,722 + -0.3 380,722 + +0.4 380,723 - -0.3 380,723 - -1.6 380,723 - -0.2 380,820 + -1.0 380,821 - -0.1
Or see this region's nucleotide sequence