Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00360 and SMc00361 are separated by 283 nucleotides SMc00361 and SMc00362 are separated by 321 nucleotides SMc00362 and SMc00363 are separated by 240 nucleotides
SMc00360: SMc00360 - hypothetical protein, at 315,764 to 316,384
SMc00360
SMc00361: SMc00361 - hypothetical protein, at 316,668 to 317,510
SMc00361
SMc00362: SMc00362 - translation initiation factor IF-3, at 317,832 to 318,263
SMc00362
SMc00363: SMc00363 - 50S ribosomal protein L35, at 318,504 to 318,707
SMc00363
Position (kb) 316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 315.800 kb on - strand at 316.093 kb on + strand, within SMc00360 at 316.094 kb on - strand, within SMc00360 at 316.193 kb on - strand, within SMc00360 at 316.225 kb on - strand, within SMc00360 at 316.385 kb on - strand at 316.414 kb on + strand at 316.459 kb on - strand at 316.505 kb on + strand at 316.553 kb on + strand at 316.559 kb on + strand at 316.847 kb on + strand, within SMc00361 at 316.847 kb on + strand, within SMc00361 at 317.004 kb on - strand, within SMc00361 at 317.269 kb on + strand, within SMc00361 at 317.429 kb on + strand at 317.515 kb on + strand at 317.697 kb on + strand at 317.697 kb on + strand at 317.697 kb on + strand at 318.348 kb on + strand at 318.348 kb on + strand at 318.349 kb on - strand at 318.349 kb on - strand at 318.398 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 315,800 - -1.2 316,093 + SMc00360 0.53 +1.0 316,094 - SMc00360 0.53 +1.0 316,193 - SMc00360 0.69 +0.4 316,225 - SMc00360 0.74 -0.4 316,385 - -2.8 316,414 + +0.4 316,459 - +0.2 316,505 + +0.4 316,553 + +0.7 316,559 + +0.5 316,847 + SMc00361 0.21 +0.7 316,847 + SMc00361 0.21 -1.7 317,004 - SMc00361 0.40 +2.5 317,269 + SMc00361 0.71 +0.2 317,429 + +0.6 317,515 + +1.4 317,697 + -0.9 317,697 + -0.3 317,697 + -1.6 318,348 + +1.1 318,348 + +0.3 318,349 - -1.2 318,349 - -1.4 318,398 + -0.3
Or see this region's nucleotide sequence