Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00359 and SMc00360 are separated by 231 nucleotides SMc00360 and SMc00361 are separated by 283 nucleotides
SMc00359: SMc00359 - hypothetical protein, at 314,549 to 315,532
SMc00359
SMc00360: SMc00360 - hypothetical protein, at 315,764 to 316,384
SMc00360
SMc00361: SMc00361 - hypothetical protein, at 316,668 to 317,510
SMc00361
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.798 kb on - strand, within SMc00359 at 315.029 kb on - strand, within SMc00359 at 315.081 kb on + strand, within SMc00359 at 315.082 kb on - strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.089 kb on + strand, within SMc00359 at 315.090 kb on - strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.175 kb on + strand, within SMc00359 at 315.176 kb on - strand, within SMc00359 at 315.176 kb on - strand, within SMc00359 at 315.350 kb on + strand, within SMc00359 at 315.440 kb on + strand at 315.530 kb on + strand at 315.530 kb on + strand at 315.530 kb on + strand at 315.665 kb on - strand at 315.800 kb on - strand at 316.093 kb on + strand, within SMc00360 at 316.094 kb on - strand, within SMc00360 at 316.193 kb on - strand, within SMc00360 at 316.225 kb on - strand, within SMc00360 at 316.385 kb on - strand at 316.414 kb on + strand at 316.459 kb on - strand at 316.505 kb on + strand at 316.553 kb on + strand at 316.559 kb on + strand at 316.847 kb on + strand, within SMc00361 at 316.847 kb on + strand, within SMc00361 at 317.004 kb on - strand, within SMc00361 at 317.269 kb on + strand, within SMc00361
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 314,798 - SMc00359 0.25 +1.2 315,029 - SMc00359 0.49 +0.4 315,081 + SMc00359 0.54 +0.3 315,082 - SMc00359 0.54 +1.9 315,089 + SMc00359 0.55 +0.6 315,089 + SMc00359 0.55 +1.0 315,089 + SMc00359 0.55 +0.6 315,089 + SMc00359 0.55 +0.1 315,089 + SMc00359 0.55 -0.1 315,089 + SMc00359 0.55 -0.5 315,089 + SMc00359 0.55 -2.4 315,089 + SMc00359 0.55 -0.2 315,090 - SMc00359 0.55 +0.1 315,175 + SMc00359 0.64 +0.2 315,175 + SMc00359 0.64 +0.3 315,175 + SMc00359 0.64 +1.2 315,175 + SMc00359 0.64 -0.0 315,176 - SMc00359 0.64 +0.0 315,176 - SMc00359 0.64 +0.7 315,350 + SMc00359 0.81 -0.9 315,440 + -0.2 315,530 + -0.1 315,530 + +0.1 315,530 + -0.9 315,665 - +0.2 315,800 - -1.2 316,093 + SMc00360 0.53 +1.0 316,094 - SMc00360 0.53 +1.0 316,193 - SMc00360 0.69 +0.4 316,225 - SMc00360 0.74 -0.4 316,385 - -2.8 316,414 + +0.4 316,459 - +0.2 316,505 + +0.4 316,553 + +0.7 316,559 + +0.5 316,847 + SMc00361 0.21 +0.7 316,847 + SMc00361 0.21 -1.7 317,004 - SMc00361 0.40 +2.5 317,269 + SMc00361 0.71 +0.2
Or see this region's nucleotide sequence