Strain Fitness in Sinorhizobium meliloti 1021 around SMc00074

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00073 and SMc00019 are separated by 92 nucleotidesSMc00019 and SMc00074 are separated by 157 nucleotidesSMc00074 and SMc00075 overlap by 1 nucleotidesSMc00075 and SMc00451 are separated by 271 nucleotides SMc00073: SMc00073 - hypothetical protein, at 1,002,130 to 1,003,068 SMc00073 SMc00019: SMc00019 - hypothetical protein, at 1,003,161 to 1,003,766 SMc00019 SMc00074: SMc00074 - transmembrane signal peptide protein, at 1,003,924 to 1,006,836 SMc00074 SMc00075: SMc00075 - ribosomal-protein-alanine acetyltransferase, at 1,006,836 to 1,007,447 SMc00075 SMc00451: SMc00451 - processing protease, at 1,007,719 to 1,009,017 SMc00451 Position (kb) 1003 1004 1005 1006 1007Strain fitness (log2 ratio) -2 -1 0 1 2at 1003.025 kb on - strandat 1003.041 kb on - strandat 1003.041 kb on - strandat 1003.147 kb on - strandat 1003.152 kb on - strandat 1003.152 kb on - strandat 1003.181 kb on + strandat 1003.182 kb on - strandat 1003.590 kb on + strand, within SMc00019at 1003.699 kb on - strand, within SMc00019at 1006.925 kb on - strand, within SMc00075at 1006.925 kb on - strand, within SMc00075at 1006.937 kb on - strand, within SMc00075at 1007.042 kb on - strand, within SMc00075at 1007.069 kb on - strand, within SMc00075at 1007.069 kb on - strand, within SMc00075at 1007.073 kb on - strand, within SMc00075at 1007.381 kb on - strand, within SMc00075at 1007.450 kb on - strandat 1007.450 kb on - strandat 1007.450 kb on - strandat 1007.669 kb on - strandat 1007.737 kb on + strandat 1007.770 kb on + strandat 1007.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,003,025 - -0.0
1,003,041 - -0.4
1,003,041 - -0.9
1,003,147 - -0.3
1,003,152 - -0.7
1,003,152 - -0.4
1,003,181 + +0.8
1,003,182 - +2.0
1,003,590 + SMc00019 0.71 -1.7
1,003,699 - SMc00019 0.89 -0.3
1,006,925 - SMc00075 0.15 +1.9
1,006,925 - SMc00075 0.15 +0.5
1,006,937 - SMc00075 0.17 +1.0
1,007,042 - SMc00075 0.34 +1.7
1,007,069 - SMc00075 0.38 +2.0
1,007,069 - SMc00075 0.38 +0.8
1,007,073 - SMc00075 0.39 -0.7
1,007,381 - SMc00075 0.89 -0.0
1,007,450 - -2.2
1,007,450 - -1.5
1,007,450 - -2.1
1,007,669 - -1.4
1,007,737 + -2.0
1,007,770 + +0.2
1,007,771 - +0.8

Or see this region's nucleotide sequence