Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1729 and SMa1731 are separated by 193 nucleotides SMa1731 and SMa1732 are separated by 19 nucleotides SMa1732 and SMa1734 are separated by 11 nucleotides
SMa1729: SMa1729 - ABC transporter substrate-binding protein, at 975,705 to 976,706
SMa1729
SMa1731: SMa1731 - betaine aldehyde dehydrogenase, at 976,900 to 978,369
SMa1731
SMa1732: SMa1732 - hypothetical protein, at 978,389 to 978,742
SMa1732
SMa1734: SMa1734 - hypothetical protein, at 978,754 to 979,836
SMa1734
Position (kb) 976
977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2 at 975.935 kb on + strand, within SMa1729 at 976.045 kb on + strand, within SMa1729 at 976.075 kb on + strand, within SMa1729 at 976.075 kb on + strand, within SMa1729 at 976.079 kb on - strand, within SMa1729 at 976.340 kb on - strand, within SMa1729 at 976.340 kb on - strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.465 kb on - strand, within SMa1729 at 976.778 kb on + strand at 976.843 kb on - strand at 976.901 kb on + strand at 976.938 kb on + strand at 976.940 kb on + strand at 977.027 kb on + strand at 977.028 kb on - strand at 977.028 kb on - strand at 977.073 kb on + strand, within SMa1731 at 977.074 kb on - strand, within SMa1731 at 977.102 kb on - strand, within SMa1731 at 977.227 kb on - strand, within SMa1731 at 977.297 kb on + strand, within SMa1731 at 977.297 kb on + strand, within SMa1731 at 977.327 kb on + strand, within SMa1731 at 977.328 kb on - strand, within SMa1731 at 977.818 kb on + strand, within SMa1731 at 977.819 kb on - strand, within SMa1731 at 977.819 kb on - strand, within SMa1731 at 977.879 kb on + strand, within SMa1731 at 977.880 kb on - strand, within SMa1731 at 977.880 kb on - strand, within SMa1731 at 977.930 kb on + strand, within SMa1731 at 978.015 kb on + strand, within SMa1731 at 978.057 kb on + strand, within SMa1731 at 978.390 kb on + strand at 978.535 kb on - strand, within SMa1732 at 978.633 kb on + strand, within SMa1732 at 978.655 kb on + strand, within SMa1732 at 978.869 kb on + strand, within SMa1734 at 978.870 kb on - strand, within SMa1734 at 978.870 kb on - strand, within SMa1734 at 979.053 kb on + strand, within SMa1734 at 979.054 kb on - strand, within SMa1734 at 979.055 kb on + strand, within SMa1734 at 979.055 kb on + strand, within SMa1734 at 979.056 kb on - strand, within SMa1734 at 979.056 kb on - strand, within SMa1734 at 979.075 kb on + strand, within SMa1734 at 979.076 kb on - strand, within SMa1734 at 979.170 kb on + strand, within SMa1734 at 979.314 kb on - strand, within SMa1734 at 979.325 kb on + strand, within SMa1734 at 979.325 kb on + strand, within SMa1734 at 979.325 kb on + strand, within SMa1734 at 979.326 kb on - strand, within SMa1734
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 975,935 + SMa1729 0.23 +1.2 976,045 + SMa1729 0.34 -0.0 976,075 + SMa1729 0.37 +0.4 976,075 + SMa1729 0.37 +0.0 976,079 - SMa1729 0.37 +0.3 976,340 - SMa1729 0.63 -0.5 976,340 - SMa1729 0.63 -1.4 976,351 + SMa1729 0.64 -0.2 976,351 + SMa1729 0.64 -0.1 976,351 + SMa1729 0.64 -2.0 976,352 - SMa1729 0.65 -0.3 976,352 - SMa1729 0.65 -1.0 976,352 - SMa1729 0.65 -1.7 976,352 - SMa1729 0.65 +0.6 976,464 + SMa1729 0.76 -1.8 976,464 + SMa1729 0.76 -2.0 976,464 + SMa1729 0.76 +0.7 976,465 - SMa1729 0.76 +0.4 976,778 + -0.1 976,843 - -0.5 976,901 + +1.1 976,938 + +0.2 976,940 + +0.2 977,027 + -0.7 977,028 - -0.1 977,028 - -0.6 977,073 + SMa1731 0.12 -0.7 977,074 - SMa1731 0.12 -1.7 977,102 - SMa1731 0.14 -1.3 977,227 - SMa1731 0.22 -0.0 977,297 + SMa1731 0.27 -0.7 977,297 + SMa1731 0.27 -0.0 977,327 + SMa1731 0.29 +0.1 977,328 - SMa1731 0.29 +0.2 977,818 + SMa1731 0.62 -1.3 977,819 - SMa1731 0.63 -1.8 977,819 - SMa1731 0.63 -0.9 977,879 + SMa1731 0.67 +0.3 977,880 - SMa1731 0.67 +1.7 977,880 - SMa1731 0.67 +0.5 977,930 + SMa1731 0.70 -0.0 978,015 + SMa1731 0.76 +0.1 978,057 + SMa1731 0.79 -0.7 978,390 + +0.2 978,535 - SMa1732 0.41 -0.3 978,633 + SMa1732 0.69 +1.4 978,655 + SMa1732 0.75 -1.5 978,869 + SMa1734 0.11 +0.8 978,870 - SMa1734 0.11 -0.4 978,870 - SMa1734 0.11 +2.0 979,053 + SMa1734 0.28 +0.7 979,054 - SMa1734 0.28 -0.2 979,055 + SMa1734 0.28 -0.2 979,055 + SMa1734 0.28 +0.4 979,056 - SMa1734 0.28 -0.6 979,056 - SMa1734 0.28 -1.0 979,075 + SMa1734 0.30 -1.0 979,076 - SMa1734 0.30 -0.1 979,170 + SMa1734 0.38 +0.2 979,314 - SMa1734 0.52 +0.5 979,325 + SMa1734 0.53 -0.1 979,325 + SMa1734 0.53 +1.3 979,325 + SMa1734 0.53 +1.1 979,326 - SMa1734 0.53 -0.0
Or see this region's nucleotide sequence