Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1099 and SMa1100 are separated by 370 nucleotides SMa1100 and SMa1101 overlap by 11 nucleotides SMa1101 and SMa1103 overlap by 23 nucleotides
SMa1099: SMa1099 - CycB1 cytochrome c-552 precursor, at 600,212 to 600,526
SMa1099
SMa1100: SMa1100 - hypothetical protein, at 600,897 to 601,418
SMa1100
SMa1101: SMa1101 - hypothetical protein, at 601,408 to 601,827
SMa1101
SMa1103: SMa1103 - adenylate cyclase, at 601,805 to 603,559
SMa1103
Position (kb) 601
602 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 600.503 kb on + strand at 600.505 kb on + strand at 600.578 kb on + strand at 600.578 kb on + strand at 600.579 kb on - strand at 600.579 kb on - strand at 600.579 kb on - strand at 600.762 kb on + strand at 600.936 kb on - strand at 601.062 kb on + strand, within SMa1100 at 601.063 kb on - strand, within SMa1100 at 601.079 kb on - strand, within SMa1100 at 601.263 kb on + strand, within SMa1100 at 601.352 kb on - strand, within SMa1100 at 601.556 kb on - strand, within SMa1101 at 601.695 kb on + strand, within SMa1101 at 601.900 kb on - strand at 601.903 kb on + strand at 601.904 kb on - strand at 601.904 kb on - strand at 601.947 kb on - strand at 602.066 kb on + strand, within SMa1103 at 602.066 kb on + strand, within SMa1103 at 602.067 kb on - strand, within SMa1103 at 602.116 kb on + strand, within SMa1103 at 602.118 kb on + strand, within SMa1103 at 602.119 kb on - strand, within SMa1103 at 602.199 kb on + strand, within SMa1103 at 602.204 kb on - strand, within SMa1103 at 602.483 kb on - strand, within SMa1103 at 602.576 kb on - strand, within SMa1103 at 602.610 kb on + strand, within SMa1103 at 602.661 kb on + strand, within SMa1103 at 602.661 kb on + strand, within SMa1103 at 602.661 kb on + strand, within SMa1103 at 602.662 kb on - strand, within SMa1103 at 602.691 kb on + strand, within SMa1103 at 602.810 kb on - strand, within SMa1103
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 600,503 + +0.5 600,505 + -1.9 600,578 + +0.8 600,578 + +1.0 600,579 - -1.0 600,579 - +0.1 600,579 - -1.1 600,762 + +0.3 600,936 - +1.2 601,062 + SMa1100 0.32 +1.6 601,063 - SMa1100 0.32 +2.8 601,079 - SMa1100 0.35 +0.4 601,263 + SMa1100 0.70 +0.6 601,352 - SMa1100 0.87 +0.1 601,556 - SMa1101 0.35 -1.3 601,695 + SMa1101 0.68 -1.1 601,900 - -1.7 601,903 + -0.4 601,904 - +1.1 601,904 - +0.6 601,947 - +0.7 602,066 + SMa1103 0.15 -0.1 602,066 + SMa1103 0.15 -2.1 602,067 - SMa1103 0.15 +1.0 602,116 + SMa1103 0.18 +0.2 602,118 + SMa1103 0.18 -0.1 602,119 - SMa1103 0.18 -0.1 602,199 + SMa1103 0.22 +1.3 602,204 - SMa1103 0.23 +0.1 602,483 - SMa1103 0.39 -1.4 602,576 - SMa1103 0.44 -0.6 602,610 + SMa1103 0.46 -1.1 602,661 + SMa1103 0.49 -1.0 602,661 + SMa1103 0.49 -1.2 602,661 + SMa1103 0.49 +0.0 602,662 - SMa1103 0.49 +1.9 602,691 + SMa1103 0.50 +0.7 602,810 - SMa1103 0.57 -0.5
Or see this region's nucleotide sequence