Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0424 and SMa0426 overlap by 4 nucleotides SMa0426 and SMa0429 are separated by 293 nucleotides
SMa0424: SMa0424 - ATP-dependent DNA ligase, at 229,290 to 230,330
SMa0424
SMa0426: SMa0426 - hypothetical protein, at 230,327 to 231,133
SMa0426
SMa0429: SMa0429 - hypothetical protein, at 231,427 to 232,443
SMa0429
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 229.357 kb on + strand at 229.357 kb on + strand at 229.469 kb on + strand, within SMa0424 at 229.469 kb on + strand, within SMa0424 at 229.470 kb on - strand, within SMa0424 at 229.520 kb on + strand, within SMa0424 at 229.524 kb on - strand, within SMa0424 at 229.662 kb on + strand, within SMa0424 at 229.882 kb on + strand, within SMa0424 at 230.598 kb on + strand, within SMa0426 at 230.599 kb on - strand, within SMa0426 at 230.599 kb on - strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.797 kb on - strand, within SMa0426 at 230.797 kb on - strand, within SMa0426 at 230.803 kb on + strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.822 kb on + strand, within SMa0426 at 230.822 kb on + strand, within SMa0426 at 230.823 kb on - strand, within SMa0426 at 230.934 kb on + strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 231.029 kb on - strand, within SMa0426 at 231.029 kb on - strand, within SMa0426 at 231.105 kb on + strand at 231.106 kb on - strand at 231.263 kb on + strand at 231.263 kb on + strand at 231.417 kb on - strand at 231.428 kb on + strand at 231.428 kb on + strand at 231.429 kb on - strand at 231.448 kb on - strand at 231.448 kb on - strand at 231.543 kb on - strand, within SMa0429 at 231.609 kb on - strand, within SMa0429 at 231.995 kb on + strand, within SMa0429 at 232.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 229,357 + +0.3 229,357 + +0.3 229,469 + SMa0424 0.17 +0.1 229,469 + SMa0424 0.17 +0.2 229,470 - SMa0424 0.17 -0.5 229,520 + SMa0424 0.22 +0.1 229,524 - SMa0424 0.22 -2.1 229,662 + SMa0424 0.36 -1.0 229,882 + SMa0424 0.57 +1.1 230,598 + SMa0426 0.34 -0.3 230,599 - SMa0426 0.34 -1.0 230,599 - SMa0426 0.34 -0.7 230,796 + SMa0426 0.58 +0.1 230,796 + SMa0426 0.58 -0.6 230,796 + SMa0426 0.58 -1.1 230,797 - SMa0426 0.58 -2.3 230,797 - SMa0426 0.58 -1.3 230,803 + SMa0426 0.59 -0.5 230,804 - SMa0426 0.59 +0.1 230,804 - SMa0426 0.59 -0.0 230,804 - SMa0426 0.59 -0.8 230,822 + SMa0426 0.61 -0.5 230,822 + SMa0426 0.61 +1.1 230,823 - SMa0426 0.61 -1.0 230,934 + SMa0426 0.75 +1.1 230,989 - SMa0426 0.82 -0.7 230,989 - SMa0426 0.82 +0.4 230,989 - SMa0426 0.82 +3.0 231,029 - SMa0426 0.87 -0.4 231,029 - SMa0426 0.87 -0.7 231,105 + -2.6 231,106 - +0.2 231,263 + -2.3 231,263 + -0.3 231,417 - -1.3 231,428 + -0.1 231,428 + -0.5 231,429 - -0.3 231,448 - -0.1 231,448 - -0.1 231,543 - SMa0429 0.11 +2.8 231,609 - SMa0429 0.18 +0.2 231,995 + SMa0429 0.56 +1.1 232,005 - -1.7
Or see this region's nucleotide sequence