Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21632

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21631 and SM_b21632 are separated by 119 nucleotidesSM_b21632 and SM_b21633 are separated by 92 nucleotidesSM_b21633 and SM_b21634 are separated by 33 nucleotides SM_b21631: SM_b21631 - carboxynorspermidine decarboxylase, at 1,659,035 to 1,660,132 _b21631 SM_b21632: SM_b21632 - 3-hydroxyacyl-CoA dehydrogenase, at 1,660,252 to 1,661,568 _b21632 SM_b21633: SM_b21633 - enoyl-CoA hydratase, at 1,661,661 to 1,662,452 _b21633 SM_b21634: SM_b21634 - acyl-CoA thioester hydrolase, at 1,662,486 to 1,662,989 _b21634 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1659.270 kb on + strand, within SM_b21631at 1659.270 kb on + strand, within SM_b21631at 1659.271 kb on - strand, within SM_b21631at 1659.271 kb on - strand, within SM_b21631at 1659.271 kb on - strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.275 kb on - strand, within SM_b21631at 1659.275 kb on - strand, within SM_b21631at 1659.275 kb on - strand, within SM_b21631at 1659.275 kb on - strand, within SM_b21631at 1659.315 kb on + strand, within SM_b21631at 1659.381 kb on + strand, within SM_b21631at 1659.381 kb on + strand, within SM_b21631at 1659.382 kb on - strand, within SM_b21631at 1659.451 kb on - strand, within SM_b21631at 1659.451 kb on - strand, within SM_b21631at 1659.891 kb on + strand, within SM_b21631at 1659.891 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.902 kb on - strand, within SM_b21631at 1659.902 kb on - strand, within SM_b21631at 1659.903 kb on + strand, within SM_b21631at 1659.904 kb on - strand, within SM_b21631at 1659.904 kb on - strand, within SM_b21631at 1659.979 kb on + strand, within SM_b21631at 1659.979 kb on + strand, within SM_b21631at 1659.980 kb on - strand, within SM_b21631at 1659.980 kb on - strand, within SM_b21631at 1659.981 kb on + strand, within SM_b21631at 1659.982 kb on - strand, within SM_b21631at 1660.113 kb on + strandat 1660.114 kb on - strandat 1660.114 kb on - strandat 1660.114 kb on - strandat 1660.153 kb on - strandat 1660.153 kb on - strandat 1660.173 kb on - strandat 1660.616 kb on + strand, within SM_b21632at 1660.622 kb on + strand, within SM_b21632at 1660.909 kb on + strand, within SM_b21632at 1661.087 kb on + strand, within SM_b21632at 1661.214 kb on + strand, within SM_b21632at 1661.214 kb on + strand, within SM_b21632at 1661.215 kb on - strand, within SM_b21632at 1661.215 kb on - strand, within SM_b21632at 1661.216 kb on + strand, within SM_b21632at 1661.216 kb on + strand, within SM_b21632at 1661.681 kb on - strandat 1661.681 kb on - strandat 1661.926 kb on - strand, within SM_b21633at 1662.393 kb on + strandat 1662.487 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,659,270 + SM_b21631 0.21 +1.0
1,659,270 + SM_b21631 0.21 +0.2
1,659,271 - SM_b21631 0.21 +0.1
1,659,271 - SM_b21631 0.21 +0.4
1,659,271 - SM_b21631 0.21 -0.9
1,659,274 + SM_b21631 0.22 +1.5
1,659,274 + SM_b21631 0.22 +0.1
1,659,274 + SM_b21631 0.22 +1.1
1,659,274 + SM_b21631 0.22 -0.1
1,659,274 + SM_b21631 0.22 +1.3
1,659,274 + SM_b21631 0.22 -1.2
1,659,274 + SM_b21631 0.22 +1.0
1,659,275 - SM_b21631 0.22 +0.7
1,659,275 - SM_b21631 0.22 +0.3
1,659,275 - SM_b21631 0.22 +1.0
1,659,275 - SM_b21631 0.22 +0.6
1,659,315 + SM_b21631 0.26 -0.2
1,659,381 + SM_b21631 0.32 +0.7
1,659,381 + SM_b21631 0.32 +1.9
1,659,382 - SM_b21631 0.32 +0.4
1,659,451 - SM_b21631 0.38 -0.8
1,659,451 - SM_b21631 0.38 -0.9
1,659,891 + SM_b21631 0.78 -1.6
1,659,891 + SM_b21631 0.78 +0.1
1,659,901 + SM_b21631 0.79 +0.8
1,659,901 + SM_b21631 0.79 -0.5
1,659,901 + SM_b21631 0.79 -0.5
1,659,901 + SM_b21631 0.79 +0.2
1,659,901 + SM_b21631 0.79 +2.3
1,659,901 + SM_b21631 0.79 +1.1
1,659,901 + SM_b21631 0.79 -1.7
1,659,902 - SM_b21631 0.79 -0.2
1,659,902 - SM_b21631 0.79 -2.4
1,659,903 + SM_b21631 0.79 +0.2
1,659,904 - SM_b21631 0.79 +0.0
1,659,904 - SM_b21631 0.79 -0.1
1,659,979 + SM_b21631 0.86 -0.8
1,659,979 + SM_b21631 0.86 +0.2
1,659,980 - SM_b21631 0.86 +0.4
1,659,980 - SM_b21631 0.86 -0.4
1,659,981 + SM_b21631 0.86 -0.2
1,659,982 - SM_b21631 0.86 +0.0
1,660,113 + -0.5
1,660,114 - -1.0
1,660,114 - +1.5
1,660,114 - +0.9
1,660,153 - +0.8
1,660,153 - -3.2
1,660,173 - +0.9
1,660,616 + SM_b21632 0.28 -0.6
1,660,622 + SM_b21632 0.28 -1.4
1,660,909 + SM_b21632 0.50 -1.3
1,661,087 + SM_b21632 0.63 -0.2
1,661,214 + SM_b21632 0.73 -0.3
1,661,214 + SM_b21632 0.73 +0.3
1,661,215 - SM_b21632 0.73 +2.0
1,661,215 - SM_b21632 0.73 +1.1
1,661,216 + SM_b21632 0.73 -2.2
1,661,216 + SM_b21632 0.73 -0.1
1,661,681 - +0.1
1,661,681 - +0.8
1,661,926 - SM_b21633 0.33 -0.8
1,662,393 + +1.5
1,662,487 + +0.0

Or see this region's nucleotide sequence