Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21372

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21370 and SM_b21371 are separated by 7 nucleotidesSM_b21371 and SM_b21372 are separated by 3 nucleotidesSM_b21372 and SM_b21373 are separated by 111 nucleotides SM_b21370: SM_b21370 - cytochrome c oxidase subunit I, at 1,033,638 to 1,036,163 _b21370 SM_b21371: SM_b21371 - hypothetical protein, at 1,036,171 to 1,036,542 _b21371 SM_b21372: SM_b21372 - LacI family transcriptional regulator, at 1,036,546 to 1,037,604 _b21372 SM_b21373: SM_b21373 - D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] (from data), at 1,037,716 to 1,038,996 _b21373 Position (kb) 1036 1037 1038Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.585 kb on + strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.586 kb on - strand, within SM_b21370at 1035.588 kb on - strand, within SM_b21370at 1035.654 kb on + strand, within SM_b21370at 1035.654 kb on + strand, within SM_b21370at 1035.654 kb on + strand, within SM_b21370at 1035.655 kb on - strand, within SM_b21370at 1035.663 kb on + strand, within SM_b21370at 1035.663 kb on + strand, within SM_b21370at 1035.676 kb on - strand, within SM_b21370at 1035.676 kb on - strand, within SM_b21370at 1035.793 kb on + strand, within SM_b21370at 1035.793 kb on + strand, within SM_b21370at 1035.793 kb on + strand, within SM_b21370at 1035.793 kb on + strand, within SM_b21370at 1035.794 kb on - strand, within SM_b21370at 1035.794 kb on - strand, within SM_b21370at 1035.794 kb on - strand, within SM_b21370at 1035.946 kb on - strandat 1035.960 kb on + strandat 1036.080 kb on + strandat 1036.080 kb on + strandat 1036.081 kb on - strandat 1036.081 kb on - strandat 1036.081 kb on - strandat 1036.092 kb on + strandat 1036.092 kb on + strandat 1036.092 kb on + strandat 1036.098 kb on + strandat 1036.098 kb on + strandat 1036.099 kb on - strandat 1036.264 kb on + strand, within SM_b21371at 1036.264 kb on + strand, within SM_b21371at 1036.265 kb on - strand, within SM_b21371at 1036.265 kb on - strand, within SM_b21371at 1036.265 kb on - strand, within SM_b21371at 1036.266 kb on + strand, within SM_b21371at 1036.267 kb on - strand, within SM_b21371at 1036.679 kb on + strand, within SM_b21372at 1036.680 kb on - strand, within SM_b21372at 1036.680 kb on - strand, within SM_b21372at 1036.680 kb on - strand, within SM_b21372at 1036.716 kb on - strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.983 kb on - strand, within SM_b21372at 1037.033 kb on + strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.142 kb on - strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.352 kb on - strand, within SM_b21372at 1037.352 kb on - strand, within SM_b21372at 1037.352 kb on - strand, within SM_b21372at 1037.452 kb on + strand, within SM_b21372at 1037.453 kb on - strand, within SM_b21372at 1037.510 kb on + strandat 1037.511 kb on - strandat 1037.819 kb on + strandat 1037.928 kb on - strand, within SM_b21373at 1037.944 kb on - strand, within SM_b21373at 1037.945 kb on + strand, within SM_b21373at 1037.993 kb on + strand, within SM_b21373at 1037.994 kb on - strand, within SM_b21373at 1038.278 kb on + strandat 1038.279 kb on - strand, within SM_b21373at 1038.436 kb on + strandat 1038.437 kb on - strand, within SM_b21373at 1038.437 kb on - strand, within SM_b21373

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,035,585 + SM_b21370 0.77 +1.0
1,035,585 + SM_b21370 0.77 -1.2
1,035,585 + SM_b21370 0.77 +1.4
1,035,585 + SM_b21370 0.77 +0.7
1,035,585 + SM_b21370 0.77 -0.4
1,035,585 + SM_b21370 0.77 +0.2
1,035,586 - SM_b21370 0.77 -1.1
1,035,586 - SM_b21370 0.77 -1.0
1,035,586 - SM_b21370 0.77 -0.6
1,035,586 - SM_b21370 0.77 -2.1
1,035,586 - SM_b21370 0.77 +1.8
1,035,588 - SM_b21370 0.77 -1.1
1,035,654 + SM_b21370 0.80 -0.5
1,035,654 + SM_b21370 0.80 -0.5
1,035,654 + SM_b21370 0.80 +0.2
1,035,655 - SM_b21370 0.80 +1.7
1,035,663 + SM_b21370 0.80 +1.2
1,035,663 + SM_b21370 0.80 +1.6
1,035,676 - SM_b21370 0.81 -2.8
1,035,676 - SM_b21370 0.81 +0.2
1,035,793 + SM_b21370 0.85 +0.7
1,035,793 + SM_b21370 0.85 -0.1
1,035,793 + SM_b21370 0.85 +0.1
1,035,793 + SM_b21370 0.85 +2.2
1,035,794 - SM_b21370 0.85 +0.2
1,035,794 - SM_b21370 0.85 -0.3
1,035,794 - SM_b21370 0.85 +1.3
1,035,946 - -0.7
1,035,960 + +0.2
1,036,080 + +0.6
1,036,080 + -1.6
1,036,081 - -2.7
1,036,081 - -0.1
1,036,081 - -0.1
1,036,092 + +1.9
1,036,092 + +1.3
1,036,092 + -0.8
1,036,098 + +0.0
1,036,098 + -0.3
1,036,099 - -0.5
1,036,264 + SM_b21371 0.25 +0.8
1,036,264 + SM_b21371 0.25 +0.2
1,036,265 - SM_b21371 0.25 +1.7
1,036,265 - SM_b21371 0.25 +0.3
1,036,265 - SM_b21371 0.25 +0.9
1,036,266 + SM_b21371 0.26 +0.2
1,036,267 - SM_b21371 0.26 +1.2
1,036,679 + SM_b21372 0.13 +0.6
1,036,680 - SM_b21372 0.13 +1.1
1,036,680 - SM_b21372 0.13 +0.6
1,036,680 - SM_b21372 0.13 +0.6
1,036,716 - SM_b21372 0.16 +1.9
1,036,925 + SM_b21372 0.36 +0.9
1,036,925 + SM_b21372 0.36 +2.2
1,036,925 + SM_b21372 0.36 -0.9
1,036,925 + SM_b21372 0.36 +0.9
1,036,926 - SM_b21372 0.36 -1.3
1,036,926 - SM_b21372 0.36 +0.0
1,036,926 - SM_b21372 0.36 +1.5
1,036,982 + SM_b21372 0.41 +1.1
1,036,982 + SM_b21372 0.41 +1.5
1,036,982 + SM_b21372 0.41 +1.0
1,036,982 + SM_b21372 0.41 +2.3
1,036,983 - SM_b21372 0.41 +0.4
1,037,033 + SM_b21372 0.46 -2.9
1,037,034 - SM_b21372 0.46 +0.8
1,037,034 - SM_b21372 0.46 +0.5
1,037,034 - SM_b21372 0.46 +0.4
1,037,141 + SM_b21372 0.56 -0.2
1,037,141 + SM_b21372 0.56 +0.7
1,037,141 + SM_b21372 0.56 +1.5
1,037,142 - SM_b21372 0.56 +0.7
1,037,351 + SM_b21372 0.76 +0.9
1,037,351 + SM_b21372 0.76 +1.9
1,037,351 + SM_b21372 0.76 -0.1
1,037,351 + SM_b21372 0.76 +0.7
1,037,351 + SM_b21372 0.76 +0.7
1,037,351 + SM_b21372 0.76 +1.1
1,037,352 - SM_b21372 0.76 +1.3
1,037,352 - SM_b21372 0.76 +0.5
1,037,352 - SM_b21372 0.76 +1.4
1,037,452 + SM_b21372 0.86 +1.0
1,037,453 - SM_b21372 0.86 +0.4
1,037,510 + -1.3
1,037,511 - +0.3
1,037,819 + -1.5
1,037,928 - SM_b21373 0.17 -0.2
1,037,944 - SM_b21373 0.18 +0.1
1,037,945 + SM_b21373 0.18 +0.5
1,037,993 + SM_b21373 0.22 -1.6
1,037,994 - SM_b21373 0.22 -2.0
1,038,278 + -0.6
1,038,279 - SM_b21373 0.44 -0.1
1,038,436 + +1.7
1,038,437 - SM_b21373 0.56 -0.9
1,038,437 - SM_b21373 0.56 +1.4

Or see this region's nucleotide sequence