Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21285

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21284 and SM_b21285 are separated by 167 nucleotidesSM_b21285 and SM_b21286 are separated by 5 nucleotides SM_b21284: SM_b21284 - uricase, at 858,904 to 860,319 _b21284 SM_b21285: SM_b21285 - transthyretin-like protein, at 860,487 to 860,858 _b21285 SM_b21286: SM_b21286 - xanthine dehydrogenase, at 860,864 to 862,345 _b21286 Position (kb) 860 861Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 859.499 kb on + strand, within SM_b21284at 859.499 kb on + strand, within SM_b21284at 859.500 kb on - strand, within SM_b21284at 859.632 kb on - strand, within SM_b21284at 859.632 kb on - strand, within SM_b21284at 859.703 kb on + strand, within SM_b21284at 859.703 kb on + strand, within SM_b21284at 859.764 kb on - strand, within SM_b21284at 859.779 kb on - strand, within SM_b21284at 859.838 kb on + strand, within SM_b21284at 859.839 kb on - strand, within SM_b21284at 860.045 kb on - strand, within SM_b21284at 860.105 kb on + strand, within SM_b21284at 860.226 kb on - strandat 860.274 kb on + strandat 860.319 kb on + strandat 860.320 kb on - strandat 860.320 kb on - strandat 860.360 kb on + strandat 860.688 kb on + strand, within SM_b21285at 860.689 kb on - strand, within SM_b21285at 860.689 kb on - strand, within SM_b21285at 860.689 kb on - strand, within SM_b21285at 860.802 kb on + strand, within SM_b21285at 860.802 kb on + strand, within SM_b21285at 860.802 kb on + strand, within SM_b21285at 860.803 kb on - strand, within SM_b21285at 860.803 kb on - strand, within SM_b21285at 860.829 kb on + strandat 860.835 kb on + strandat 860.836 kb on - strandat 860.844 kb on + strandat 860.845 kb on - strandat 860.845 kb on - strandat 861.240 kb on - strand, within SM_b21286at 861.324 kb on - strand, within SM_b21286at 861.681 kb on - strand, within SM_b21286at 861.787 kb on + strand, within SM_b21286

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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859,499 + SM_b21284 0.42 -0.7
859,499 + SM_b21284 0.42 +0.7
859,500 - SM_b21284 0.42 -2.0
859,632 - SM_b21284 0.51 -1.0
859,632 - SM_b21284 0.51 -0.8
859,703 + SM_b21284 0.56 -0.1
859,703 + SM_b21284 0.56 -0.6
859,764 - SM_b21284 0.61 +0.2
859,779 - SM_b21284 0.62 +0.6
859,838 + SM_b21284 0.66 -1.3
859,839 - SM_b21284 0.66 -0.4
860,045 - SM_b21284 0.81 +0.2
860,105 + SM_b21284 0.85 +1.0
860,226 - -0.9
860,274 + +1.0
860,319 + -0.0
860,320 - +1.0
860,320 - -0.9
860,360 + -0.4
860,688 + SM_b21285 0.54 +1.1
860,689 - SM_b21285 0.54 +1.1
860,689 - SM_b21285 0.54 +0.6
860,689 - SM_b21285 0.54 +0.1
860,802 + SM_b21285 0.85 +1.5
860,802 + SM_b21285 0.85 -2.0
860,802 + SM_b21285 0.85 -1.3
860,803 - SM_b21285 0.85 -0.2
860,803 - SM_b21285 0.85 +1.1
860,829 + +3.0
860,835 + -0.2
860,836 - -1.1
860,844 + -0.1
860,845 - +0.3
860,845 - -2.2
861,240 - SM_b21286 0.25 -1.6
861,324 - SM_b21286 0.31 -3.0
861,681 - SM_b21286 0.55 -0.3
861,787 + SM_b21286 0.62 -1.8

Or see this region's nucleotide sequence