Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21248

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21246 and SM_b21247 are separated by 40 nucleotidesSM_b21247 and SM_b21248 are separated by 68 nucleotidesSM_b21248 and SM_b21249 are separated by 31 nucleotides SM_b21246: SM_b21246 - UDP-phosphate galactose phosphotransferase, at 814,934 to 815,626 _b21246 SM_b21247: SM_b21247 - hypothetical protein, at 815,667 to 816,353 _b21247 SM_b21248: SM_b21248 - aminotransferase, at 816,422 to 817,612 _b21248 SM_b21249: SM_b21249 - sulfotransferase, at 817,644 to 818,486 _b21249 Position (kb) 816 817 818Strain fitness (log2 ratio) -2 -1 0 1 2at 815.473 kb on + strand, within SM_b21246at 815.473 kb on + strand, within SM_b21246at 815.473 kb on + strand, within SM_b21246at 815.474 kb on - strand, within SM_b21246at 815.474 kb on - strand, within SM_b21246at 815.474 kb on - strand, within SM_b21246at 815.683 kb on + strandat 815.684 kb on - strandat 815.897 kb on - strand, within SM_b21247at 816.106 kb on - strand, within SM_b21247at 816.141 kb on + strand, within SM_b21247at 816.141 kb on + strand, within SM_b21247at 816.142 kb on - strand, within SM_b21247at 816.142 kb on - strand, within SM_b21247at 816.142 kb on - strand, within SM_b21247at 816.142 kb on - strand, within SM_b21247at 816.179 kb on + strand, within SM_b21247at 816.351 kb on + strandat 816.352 kb on - strandat 816.386 kb on + strandat 816.387 kb on - strandat 816.387 kb on - strandat 816.401 kb on + strandat 816.440 kb on + strandat 816.536 kb on + strandat 816.536 kb on + strandat 816.536 kb on + strandat 816.537 kb on - strandat 816.537 kb on - strandat 816.537 kb on - strandat 816.537 kb on - strandat 816.537 kb on - strandat 816.555 kb on + strand, within SM_b21248at 816.754 kb on - strand, within SM_b21248at 816.832 kb on - strand, within SM_b21248at 816.867 kb on + strand, within SM_b21248at 816.867 kb on + strand, within SM_b21248at 817.055 kb on + strand, within SM_b21248at 817.055 kb on + strand, within SM_b21248at 817.056 kb on - strand, within SM_b21248at 817.056 kb on - strand, within SM_b21248at 817.068 kb on - strand, within SM_b21248at 817.194 kb on + strand, within SM_b21248at 817.194 kb on + strand, within SM_b21248at 817.194 kb on + strand, within SM_b21248at 817.194 kb on + strand, within SM_b21248at 817.194 kb on + strand, within SM_b21248at 817.195 kb on - strand, within SM_b21248at 817.195 kb on - strand, within SM_b21248at 817.213 kb on + strand, within SM_b21248at 817.213 kb on + strand, within SM_b21248at 817.216 kb on + strand, within SM_b21248at 817.216 kb on + strand, within SM_b21248at 817.298 kb on + strand, within SM_b21248at 817.299 kb on - strand, within SM_b21248at 817.299 kb on - strand, within SM_b21248at 817.301 kb on - strand, within SM_b21248at 817.301 kb on - strand, within SM_b21248at 817.427 kb on - strand, within SM_b21248at 817.610 kb on + strandat 817.744 kb on + strand, within SM_b21249at 817.745 kb on - strand, within SM_b21249at 817.831 kb on - strand, within SM_b21249at 818.020 kb on + strand, within SM_b21249at 818.021 kb on - strand, within SM_b21249at 818.040 kb on - strand, within SM_b21249at 818.059 kb on - strand, within SM_b21249at 818.113 kb on + strand, within SM_b21249at 818.114 kb on - strand, within SM_b21249at 818.145 kb on + strand, within SM_b21249at 818.145 kb on + strand, within SM_b21249at 818.146 kb on - strand, within SM_b21249at 818.287 kb on - strand, within SM_b21249at 818.303 kb on + strand, within SM_b21249at 818.304 kb on - strand, within SM_b21249at 818.304 kb on - strand, within SM_b21249at 818.314 kb on - strand, within SM_b21249at 818.314 kb on - strand, within SM_b21249at 818.314 kb on - strand, within SM_b21249at 818.362 kb on + strand, within SM_b21249at 818.363 kb on - strand, within SM_b21249at 818.393 kb on - strand, within SM_b21249at 818.432 kb on + strandat 818.440 kb on - strandat 818.534 kb on + strandat 818.576 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
815,473 + SM_b21246 0.78 -2.0
815,473 + SM_b21246 0.78 -0.5
815,473 + SM_b21246 0.78 +0.1
815,474 - SM_b21246 0.78 +0.2
815,474 - SM_b21246 0.78 +1.1
815,474 - SM_b21246 0.78 +0.2
815,683 + +0.5
815,684 - -0.4
815,897 - SM_b21247 0.33 -0.1
816,106 - SM_b21247 0.64 -0.1
816,141 + SM_b21247 0.69 +0.1
816,141 + SM_b21247 0.69 -1.3
816,142 - SM_b21247 0.69 +0.5
816,142 - SM_b21247 0.69 -2.6
816,142 - SM_b21247 0.69 +0.7
816,142 - SM_b21247 0.69 +0.1
816,179 + SM_b21247 0.75 -2.5
816,351 + -0.7
816,352 - +0.0
816,386 + -0.3
816,387 - -2.0
816,387 - +0.1
816,401 + -0.5
816,440 + +0.7
816,536 + +0.0
816,536 + +1.3
816,536 + -1.1
816,537 - +0.2
816,537 - +0.7
816,537 - -0.5
816,537 - +0.2
816,537 - +0.8
816,555 + SM_b21248 0.11 -1.0
816,754 - SM_b21248 0.28 -1.6
816,832 - SM_b21248 0.34 +2.7
816,867 + SM_b21248 0.37 +0.5
816,867 + SM_b21248 0.37 -0.2
817,055 + SM_b21248 0.53 -1.4
817,055 + SM_b21248 0.53 +0.9
817,056 - SM_b21248 0.53 -1.5
817,056 - SM_b21248 0.53 -1.4
817,068 - SM_b21248 0.54 -0.9
817,194 + SM_b21248 0.65 -0.5
817,194 + SM_b21248 0.65 -1.2
817,194 + SM_b21248 0.65 +2.4
817,194 + SM_b21248 0.65 +2.1
817,194 + SM_b21248 0.65 -1.2
817,195 - SM_b21248 0.65 -1.2
817,195 - SM_b21248 0.65 +1.3
817,213 + SM_b21248 0.66 -1.0
817,213 + SM_b21248 0.66 -0.3
817,216 + SM_b21248 0.67 +1.0
817,216 + SM_b21248 0.67 +0.1
817,298 + SM_b21248 0.74 -0.5
817,299 - SM_b21248 0.74 +0.3
817,299 - SM_b21248 0.74 -0.7
817,301 - SM_b21248 0.74 -1.5
817,301 - SM_b21248 0.74 +0.8
817,427 - SM_b21248 0.84 -1.6
817,610 + -1.9
817,744 + SM_b21249 0.12 -0.4
817,745 - SM_b21249 0.12 +0.8
817,831 - SM_b21249 0.22 -1.0
818,020 + SM_b21249 0.45 -0.6
818,021 - SM_b21249 0.45 -2.0
818,040 - SM_b21249 0.47 +1.1
818,059 - SM_b21249 0.49 +0.8
818,113 + SM_b21249 0.56 +0.3
818,114 - SM_b21249 0.56 +0.7
818,145 + SM_b21249 0.59 +0.3
818,145 + SM_b21249 0.59 -0.6
818,146 - SM_b21249 0.60 -0.1
818,287 - SM_b21249 0.76 +0.1
818,303 + SM_b21249 0.78 +0.4
818,304 - SM_b21249 0.78 +0.2
818,304 - SM_b21249 0.78 +0.9
818,314 - SM_b21249 0.79 -0.3
818,314 - SM_b21249 0.79 +0.4
818,314 - SM_b21249 0.79 +0.1
818,362 + SM_b21249 0.85 -1.0
818,363 - SM_b21249 0.85 +0.8
818,393 - SM_b21249 0.89 -1.0
818,432 + +1.2
818,440 - +1.3
818,534 + -0.6
818,576 - -0.0

Or see this region's nucleotide sequence